View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_68 (Length: 251)
Name: NF1077_low_68
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_68 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 134 - 251
Target Start/End: Original strand, 44645370 - 44645487
Alignment:
| Q |
134 |
caaacaccatgtggaagaagcatagttctcagacaaaacaacgacataaatcattgattcatcatatagatgaatcaattcagcatatagatgactgatg |
233 |
Q |
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| T |
44645370 |
caaacaccatgtggaagaagcatagttctcagacaaaacaacgacataaatcattgattcatcatatagatgaatcaattcagcatatagatgagtgatg |
44645469 |
T |
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| Q |
234 |
aagttgtcacgtgtgtcc |
251 |
Q |
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| T |
44645470 |
aagttgtcacgtgtgtcc |
44645487 |
T |
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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 14815746 - 14815795
Alignment:
| Q |
126 |
agttcatccaaacaccatgtggaagaagcatagttctcagacaaaacaac |
175 |
Q |
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| T |
14815746 |
agttcatccagacaccatgtggaggaagcatagttctcagaaaaaacaac |
14815795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 14829994 - 14829945
Alignment:
| Q |
126 |
agttcatccaaacaccatgtggaagaagcatagttctcagacaaaacaac |
175 |
Q |
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| T |
14829994 |
agttcatccagacaccatgtggaggaagcatagttctcagaaaaaacaac |
14829945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 193
Target Start/End: Complemental strand, 37928123 - 37927967
Alignment:
| Q |
34 |
tctgatgactcacatttgatgggtccaccttatagaagacaggtatcacaagcctttcactatatttctctttgcattggaggatatgtgtgagttcatc |
133 |
Q |
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| T |
37928123 |
tctgatgcctaacagttgacggatccaccttatagaagacaggtatcacttcccttcca---tatctctccttacattccagtatctttgtgaattcatc |
37928027 |
T |
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| Q |
134 |
caaacaccatgtggaagaagcatagttctcagacaaaacaacgacataaatcattgattc |
193 |
Q |
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| T |
37928026 |
caagcaccatgtggaagaagcatacttttctgacaaaatgaccacataaattgttgattc |
37927967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 44672648 - 44672695
Alignment:
| Q |
112 |
ggaggatatgtgtgagttcatccaaacaccatgtggaagaagcatagt |
159 |
Q |
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| T |
44672648 |
ggaggatacgtgtgagttcatccaaacaccaagtggaataagcgtagt |
44672695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 5568763 - 5568726
Alignment:
| Q |
126 |
agttcatccaaacaccatgtggaagaagcatagttctc |
163 |
Q |
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| T |
5568763 |
agttcattcaaacaccatgttgaagaagcatagttctc |
5568726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 192
Target Start/End: Complemental strand, 25720546 - 25720402
Alignment:
| Q |
45 |
acatttgatgggtccaccttatagaagacaggtatcacaagcctttcactatatttctctttgcattggaggatatgtgtgagttcatccaaacaccatg |
144 |
Q |
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| T |
25720546 |
acatttgatggatccaccttgtagaagaccggtatcacatcccttcca-tatatttgt--ttgcactcgagtatctttgtgagttcatccatacaccatg |
25720450 |
T |
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| Q |
145 |
tggaagaagcatagttctcagacaaaacaacgacataaatcattgatt |
192 |
Q |
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| T |
25720449 |
tggaagaagcataatgctcggataaaatgatgacgtaaatcattgatt |
25720402 |
T |
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