View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_69 (Length: 251)
Name: NF1077_low_69
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_69 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 44645468 - 44645708
Alignment:
| Q |
1 |
tgaagttgtcacgtgtgtcctcccctctaaagctgaggaacacatcgtacttctgagtttgactaggaggagaaatagccgcagcagcagaagaacttga |
100 |
Q |
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| T |
44645468 |
tgaagttgtcacgtgtgtcctcccctctatagctgaggaacacatcatacttctgagtttgactaggaggagaaatagccgcagcagcagaagaacttga |
44645567 |
T |
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| Q |
101 |
tcccaacattgtaaagaaacagagttgtattttcctgtatttgcactgcacctcttaagttaacttttcttaggtgtctccgcctgctttttgtatcaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44645568 |
tcccaacattgtaaagaaacagagttgtattttcctgtatttgcactgcacctcttaagttaacttttcttaggtgtctccgcctgctttttgtatcaac |
44645667 |
T |
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| Q |
201 |
atatatacaatagctgcatgtttttgctgtctatgtctctg |
241 |
Q |
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| T |
44645668 |
atatatacaatagctgcatgtttttgctgtctatgtctctg |
44645708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37927859 - 37927814
Alignment:
| Q |
1 |
tgaagttgtcacgtgtgtcctcccctctaaagctgaggaacacatc |
46 |
Q |
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| T |
37927859 |
tgaagttgtcacgagtatcctctcctctgaagctgaggaacacatc |
37927814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 37959480 - 37959525
Alignment:
| Q |
1 |
tgaagttgtcacgtgtgtcctcccctctaaagctgaggaacacatc |
46 |
Q |
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| T |
37959480 |
tgaagtagtgacgagtgtcctctcctctaaagctgaggaacacatc |
37959525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 37450052 - 37450015
Alignment:
| Q |
15 |
gtgtcctcccctctaaagctgaggaacacatcgtactt |
52 |
Q |
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| T |
37450052 |
gtgtcctcgcctctaaagctgatgaacacatcgtactt |
37450015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 178141 - 178105
Alignment:
| Q |
12 |
cgtgtgtcctcccctctaaagctgaggaacacatcgt |
48 |
Q |
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| T |
178141 |
cgtgtgtcctcgcctctaaagctgatgaacacatcgt |
178105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 14639151 - 14639187
Alignment:
| Q |
12 |
cgtgtgtcctcccctctaaagctgaggaacacatcgt |
48 |
Q |
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| T |
14639151 |
cgtgtgtcctcgcctctaaagctgatgaacacatcgt |
14639187 |
T |
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