View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1077_low_70 (Length: 251)

Name: NF1077_low_70
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1077_low_70
NF1077_low_70
[»] chr8 (5 HSPs)
chr8 (1-242)||(18393178-18393419)
chr8 (130-196)||(27402644-27402710)
chr8 (172-229)||(13097753-13097810)
chr8 (118-214)||(31772780-31772876)
chr8 (172-207)||(15850240-15850275)
[»] chr1 (5 HSPs)
chr1 (182-242)||(3387949-3388009)
chr1 (173-231)||(32741162-32741220)
chr1 (174-214)||(23636308-23636348)
chr1 (142-229)||(16426747-16426833)
chr1 (172-214)||(48632361-48632403)
[»] chr6 (7 HSPs)
chr6 (119-231)||(34013799-34013911)
chr6 (118-231)||(34010938-34011051)
chr6 (142-242)||(33234663-33234763)
chr6 (112-194)||(17540369-17540451)
chr6 (175-231)||(14494226-14494282)
chr6 (172-237)||(12844216-12844281)
chr6 (172-231)||(19294647-19294706)
[»] chr7 (6 HSPs)
chr7 (117-231)||(22291127-22291241)
chr7 (172-228)||(44572315-44572371)
chr7 (120-214)||(46014549-46014643)
chr7 (172-210)||(27616664-27616702)
chr7 (190-238)||(11816744-11816792)
chr7 (174-238)||(11820323-11820387)
[»] chr4 (7 HSPs)
chr4 (118-231)||(55680999-55681112)
chr4 (117-213)||(658195-658291)
chr4 (172-231)||(54305938-54305997)
chr4 (172-205)||(7762793-7762826)
chr4 (174-235)||(32595264-32595325)
chr4 (119-160)||(44508051-44508092)
chr4 (173-209)||(44508013-44508049)
[»] chr3 (3 HSPs)
chr3 (117-214)||(43921666-43921763)
chr3 (173-214)||(11411029-11411070)
chr3 (40-89)||(51945191-51945240)
[»] chr2 (6 HSPs)
chr2 (117-194)||(41849343-41849420)
chr2 (131-231)||(34409326-34409426)
chr2 (172-231)||(26576381-26576440)
chr2 (118-228)||(17651572-17651681)
chr2 (174-238)||(38783555-38783619)
chr2 (173-210)||(9929991-9930028)
[»] scaffold1723 (1 HSPs)
scaffold1723 (182-229)||(185-232)
[»] chr5 (1 HSPs)
chr5 (173-214)||(32676423-32676464)


Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 18393178 - 18393419
Alignment:
Q  1 tgttctgttcttgaatagtgtcaaattggcttgttattatttaactaataatctaatattattttaattttataatgttttcattaacactgattagtat 100  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18393178 tgttctgttcttgaatagtttcaaattgccttgttattatttaactaataatctaatattattttaattttataatattttcattaacactgattagtat 18393277  T
Q  101 tgattgtaccgataacctatgaagcacaaacacctctaggattaggcgtttcggagtgtctgacatgtgtaggtgtccgacactcctatgacactcgtat 200  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  18393278 tgattgtactgataacctatgaagcacaaacacctctaggattaggcgtttcggagtgtctgacatgtgtaggtgttcgacactcctatgacactcgtac 18393377  T
Q  201 gacacgtgtcggactagtgtcctaaataatttgttttcatct 242  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  18393378 gacacgtgtcgaactagtgtcctaaataatttgttttcatct 18393419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 27402710 - 27402644
Alignment:
Q  130 acacctctaggattaggcgtttcggagtgtctgacatgtgtaggtgtccgacactcctatgacactc 196  Q
    |||||||||||||||||||| | |  |||||||||| |||| |||||||||||||||| ||||||||    
T  27402710 acacctctaggattaggcgtgttgtggtgtctgacacgtgtcggtgtccgacactcctttgacactc 27402644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 13097810 - 13097753
Alignment:
Q  172 ggtgtccgacactcctatgacactcgtatgacacgtgtcggactagtgtcctaaataa 229  Q
    |||||||||||||| ||||||||||||| |||||| ||||||  ||| ||||||||||    
T  13097810 ggtgtccgacactcatatgacactcgtacgacacgagtcggataagtatcctaaataa 13097753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 31772876 - 31772780
Alignment:
Q  118 tatgaagcacaaacacctctaggattaggcgtttcggagtgtctgacatgtgtaggtgtccgacactcctatgacactcgtatgacacgtgtcggac 214  Q
    ||||||||||  |||||| |||||  |||||  |||  ||||| |||| |||| | ||||| ||||| |||||||||| ||||||||||||||||||    
T  31772876 tatgaagcacggacacctttaggaccaggcgcgtcgtggtgtccgacacgtgtcgatgtccaacactgctatgacacttgtatgacacgtgtcggac 31772780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 15850240 - 15850275
Alignment:
Q  172 ggtgtccgacactcctatgacactcgtatgacacgt 207  Q
    |||||||||||||||||||||||||||| |||||||    
T  15850240 ggtgtccgacactcctatgacactcgtacgacacgt 15850275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 3388009 - 3387949
Alignment:
Q  182 actcctatgacactcgtatgacacgtgtcggactagtgtcctaaataatttgttttcatct 242  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  3388009 actcctatgacactcgtacgacacgtgtcggactagtgtcttaaataatttgttttcatct 3387949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 32741220 - 32741162
Alignment:
Q  173 gtgtccgacactcctatgacactcgtatgacacgtgtcggactagtgtcctaaataatt 231  Q
    ||||| ||||||||||||||||||||| ||||||||||| || || |||||||||||||    
T  32741220 gtgtctgacactcctatgacactcgtacgacacgtgtcgaaccagcgtcctaaataatt 32741162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 23636348 - 23636308
Alignment:
Q  174 tgtccgacactcctatgacactcgtatgacacgtgtcggac 214  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  23636348 tgtccgacactcctatgacactcgtaagacacgtgtcggac 23636308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 16426833 - 16426747
Alignment:
Q  142 ttaggcgtttcggagtgtctgacatgtgtaggtgtccgacactcctatgacactcgtatgacacgtgtcggactagtgtcctaaataa 229  Q
    |||||||| |||  |||||||||| | || |||||||||||||||||||| ||||||| |||| |||||| || |||||| |||||||    
T  16426833 ttaggcgtgtcgcggtgtctgacaggcgttggtgtccgacactcctatga-actcgtacgacatgtgtcgaacaagtgtcataaataa 16426747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 48632361 - 48632403
Alignment:
Q  172 ggtgtccgacactcctatgacactcgtatgacacgtgtcggac 214  Q
    ||||||||||||||| ||||||||||||||||||| |||||||    
T  48632361 ggtgtccgacactcccatgacactcgtatgacacgcgtcggac 48632403  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 231
Target Start/End: Complemental strand, 34013911 - 34013799
Alignment:
Q  119 atgaagcacaaacacctctaggattaggcgtttcggagtgtctgacatgtgtaggtgtccgacactcctatgacactcgtatgacacgtgtcggactagt 218  Q
    |||||||||  ||||||| |||| ||||||| |||  ||||| |||| | || ||||||||||||||| |||||||| ||| ||||||||||| ||  ||    
T  34013911 atgaagcacggacacctcaaggactaggcgtgtcgcggtgtccgacaagcgtcggtgtccgacactccaatgacacttgtacgacacgtgtcgaaccggt 34013812  T
Q  219 gtcctaaataatt 231  Q
    |||||||||||||    
T  34013811 gtcctaaataatt 34013799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 231
Target Start/End: Original strand, 34010938 - 34011051
Alignment:
Q  118 tatgaagcacaaacacctctaggattaggcgtttcggagtgtctgacatgtgtaggtgtccgacactcctatgacactcgtatgacacgtgtcggactag 217  Q
    ||||||||||  ||||||| |||| ||||||| |||  ||||| |||| | || ||||||||||||||| |||||||| ||  ||||||||||| ||  |    
T  34010938 tatgaagcacggacacctcaaggactaggcgtgtcgcggtgtccgacacgcgtcggtgtccgacactccaatgacacttgtgcgacacgtgtcgaaccgg 34011037  T
Q  218 tgtcctaaataatt 231  Q
    ||||||||||||||    
T  34011038 tgtcctaaataatt 34011051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 33234663 - 33234763
Alignment:
Q  142 ttaggcgtttcggagtgtctgacatgtgtaggtgtccgacactcctatgacactcgtatgacacgtgtcggactagtgtcctaaataatttgttttcatc 241  Q
    |||||||| |||  ||||| |||||| || |||||| |||||  ||| |||||||||| ||||||||| |||| |||||| ||||||| |||||||||||    
T  33234663 ttaggcgtgtcgcggtgtccgacatgcgtcggtgtcggacacatctaagacactcgtacgacacgtgttggacaagtgtcataaataagttgttttcatc 33234762  T
Q  242 t 242  Q
    |    
T  33234763 t 33234763  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 17540451 - 17540369
Alignment:
Q  112 ataacctatgaagcacaaacacctctaggattaggcgtttcggagtgtctgacatgtgtaggtgtccgacactcctatgacac 194  Q
    ||||| ||||||||||| |||||||||||||||| ||| ||| |||||| || | |  | |||||||||||||||||||||||    
T  17540451 ataacatatgaagcacatacacctctaggattagacgtgtcgcagtgtccgatacgcatcggtgtccgacactcctatgacac 17540369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 14494226 - 14494282
Alignment:
Q  175 gtccgacactcctatgacactcgtatgacacgtgtcggactagtgtcctaaataatt 231  Q
    |||||||||||||||||||| |||| ||||||||||| || |||||| |||||||||    
T  14494226 gtccgacactcctatgacacccgtacgacacgtgtcgaaccagtgtcttaaataatt 14494282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 12844281 - 12844216
Alignment:
Q  172 ggtgtccgacactcctatgacactcgtatgacacgtgtcggactagtgtcctaaataatttgtttt 237  Q
    |||||||||||||||||| ||||  ||| ||||||||||| ||  ||||||||||||||| |||||    
T  12844281 ggtgtccgacactcctataacacctgtacgacacgtgtcgaaccggtgtcctaaataattggtttt 12844216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 19294706 - 19294647
Alignment:
Q  172 ggtgtccgacactcctatgacactcgtatgacacgtgtcggactagtgtcctaaataatt 231  Q
    |||||||||||||||| |||||| |||| ||||||||||| ||  |||||| ||||||||    
T  19294706 ggtgtccgacactcctgtgacacccgtacgacacgtgtcgaaccggtgtccaaaataatt 19294647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 231
Target Start/End: Complemental strand, 22291241 - 22291127
Alignment:
Q  117 ctatgaagcacaaacacctctaggattaggcgtttcggagtgtctgacatgtgtaggtgtccgacactcctatgacactcgtatgacacgtgtcggacta 216  Q
    |||||||||||  | |||||||||| ||||| | ||| |||||| |||| | || ||||||||||||||||||||||| ||||  |||||||| | ||      
T  22291241 ctatgaagcacggaaacctctaggactaggcatgtcgcagtgtccgacacgcgtcggtgtccgacactcctatgacacccgtaccacacgtgttgaaccg 22291142  T
Q  217 gtgtcctaaataatt 231  Q
    |||||||||||||||    
T  22291141 gtgtcctaaataatt 22291127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 44572315 - 44572371
Alignment:
Q  172 ggtgtccgacactcctatgacactcgtatgacacgtgtcggactagtgtcctaaata 228  Q
    |||||||||||||||||||||||||||| ||||||||||| ||  ||||||||||||    
T  44572315 ggtgtccgacactcctatgacactcgtacgacacgtgtcgaaccggtgtcctaaata 44572371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 46014643 - 46014549
Alignment:
Q  120 tgaagcacaaacacctctaggattaggcgtttcggagtgtctgacatgtgtaggtgtccgacactcctatgacactcgtatgacacgtgtcggac 214  Q
    |||||||| |||||||| |||| ||||||| ||| ||||||  |||   || ||||||||| |||||||||||||||||| |||| |||||||||    
T  46014643 tgaagcacgaacacctccaggactaggcgtgtcgcagtgtccaacacccgttggtgtccgaaactcctatgacactcgtacgacatgtgtcggac 46014549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 27616702 - 27616664
Alignment:
Q  172 ggtgtccgacactcctatgacactcgtatgacacgtgtc 210  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  27616702 ggtgtccgacactcatatgacactcgtacgacacgtgtc 27616664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 11816744 - 11816792
Alignment:
Q  190 gacactcgtatgacacgtgtcggactagtgtcctaaataatttgttttc 238  Q
    ||||||| ||||||||||||| ||| |||||||||||||| || |||||    
T  11816744 gacactcttatgacacgtgtcagacgagtgtcctaaataagttattttc 11816792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 11820323 - 11820387
Alignment:
Q  174 tgtccgacactcctatgacactcgtatgacacgtgtcggactagtgtcctaaataatttgttttc 238  Q
    ||||||| |||  ||||||||||||| |||||||||| ||| ||||| |||||||| || |||||    
T  11820323 tgtccgaaacttgtatgacactcgtacgacacgtgtcagacaagtgttctaaataagttattttc 11820387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 231
Target Start/End: Complemental strand, 55681112 - 55680999
Alignment:
Q  118 tatgaagcacaaacacctctaggattaggcgtttcggagtgtctgacatgtgtaggtgtccgacactcctatgacactcgtatgacacgtgtcggactag 217  Q
    ||||||||||  ||||||| |||| ||||||| |||  ||||| |||| | || |||||||||||||||||||||||| ||| ||||| ||||| ||       
T  55681112 tatgaagcacggacacctcgaggactaggcgtgtcgcggtgtccgacacgcgtcggtgtccgacactcctatgacacttgtacgacacatgtcgaaccgc 55681013  T
Q  218 tgtcctaaataatt 231  Q
    ||||||||||||||    
T  55681012 tgtcctaaataatt 55680999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 658195 - 658291
Alignment:
Q  117 ctatgaagcacaaacacctctaggattaggcgtttcggagtgtctgacatgtgtaggtgtccgacactcctatgacactcgtatgacacgtgtcgga 213  Q
    |||||||||||  |||||| |||||  | |||| ||| |||||| |||| |||| ||||||||||||| |||||||||| ||| |||||||||||||    
T  658195 ctatgaagcacggacacctataggaccaagcgtgtcgcagtgtccgacacgtgtcggtgtccgacacttctatgacacttgtacgacacgtgtcgga 658291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 54305997 - 54305938
Alignment:
Q  172 ggtgtccgacactcctatgacactcgtatgacacgtgtcggactagtgtcctaaataatt 231  Q
    ||||||||||||||||||||||| |||| ||||||||||| ||   ||||||||||||||    
T  54305997 ggtgtccgacactcctatgacacccgtacgacacgtgtcgaaccgatgtcctaaataatt 54305938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 7762793 - 7762826
Alignment:
Q  172 ggtgtccgacactcctatgacactcgtatgacac 205  Q
    |||||| |||||||||||||||||||||||||||    
T  7762793 ggtgtctgacactcctatgacactcgtatgacac 7762826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 32595325 - 32595264
Alignment:
Q  174 tgtccgacactcctatgacactcgtatgacacgtgtcggactagtgtcctaaataatttgtt 235  Q
    ||||||||||| | |||||||||||| ||||||||||  || |||||| ||||||| |||||    
T  32595325 tgtccgacacttcaatgacactcgtacgacacgtgtccaacaagtgtcttaaataagttgtt 32595264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 44508092 - 44508051
Alignment:
Q  119 atgaagcacaaacacctctaggattaggcgtttcggagtgtc 160  Q
    |||||||||||||||||||| |||||||||| ||| ||||||    
T  44508092 atgaagcacaaacacctctaagattaggcgtatcgcagtgtc 44508051  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 44508049 - 44508013
Alignment:
Q  173 gtgtccgacactcctatgacactcgtatgacacgtgt 209  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  44508049 gtgtctgacactcctatgacactcgtacgacacgtgt 44508013  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 43921666 - 43921763
Alignment:
Q  117 ctatgaagcacaaacacctctaggattaggcgtttcggagtgtctgacatgtgtaggtgtccgacactcctatgacactcgtatgacacgtgtcggac 214  Q
    |||||||||||  |||||||||||| ||| ||| ||   ||||| |||| |  | |||||||||||||||||||||||| || |||||||||||||||    
T  43921666 ctatgaagcacggacacctctaggactagccgtgtcacggtgtccgacacgcttcggtgtccgacactcctatgacacttgtctgacacgtgtcggac 43921763  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 11411070 - 11411029
Alignment:
Q  173 gtgtccgacactcctatgacactcgtatgacacgtgtcggac 214  Q
    ||||||||||||||||||||||| || |||||| ||||||||    
T  11411070 gtgtccgacactcctatgacacttgtctgacacatgtcggac 11411029  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 51945240 - 51945191
Alignment:
Q  40 tttaactaataatctaatattattttaattttataatgttttcattaaca 89  Q
    |||||| |||||||||||||| |||| |||||||||| ||||| ||||||    
T  51945240 tttaaccaataatctaatattcttttcattttataatattttccttaaca 51945191  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 41849420 - 41849343
Alignment:
Q  117 ctatgaagcacaaacacctctaggattaggcgtttcggagtgtctgacatgtgtaggtgtccgacactcctatgacac 194  Q
    |||||||||||  |||||||||| ||||||||| |||  ||||| |||| | || |||||||||||||||||||||||    
T  41849420 ctatgaagcacggacacctctagaattaggcgtgtcgcggtgtcagacacgcgtcggtgtccgacactcctatgacac 41849343  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 34409326 - 34409426
Alignment:
Q  131 cacctctaggattaggcgtttcggagtgtctgacatgtgtaggtgtccgacactcctatgacactcgtatgacacgtgtcggactagtgtcctaaataat 230  Q
    ||||||||||| ||||||| |||  ||||| |||| | || | |||||||||||||||||| || |||| ||||||||||  ||  ||||||||||||||    
T  34409326 cacctctaggactaggcgtgtcgcggtgtcggacacgcgttgatgtccgacactcctatgatacccgtacgacacgtgtcaaaccggtgtcctaaataat 34409425  T
Q  231 t 231  Q
    |    
T  34409426 t 34409426  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 26576440 - 26576381
Alignment:
Q  172 ggtgtccgacactcctatgacactcgtatgacacgtgtcggactagtgtcctaaataatt 231  Q
    ||||||||||||||||||||||| |||| ||||||||||| ||  ||||| |||||||||    
T  26576440 ggtgtccgacactcctatgacacccgtacgacacgtgtcgaaccggtgtcttaaataatt 26576381  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 17651681 - 17651572
Alignment:
Q  118 tatgaagcacaaacacctctaggattaggcgtttcggagtgtctgacatgtgtaggtgtccgacactcctatgacactcgtatgacacgtgtcggactag 217  Q
    ||||||||||  |||||| ||||||||||||| |||  ||||| |||| | ||  ||||||||||||| ||||||||| |||  |||| ||||| || ||    
T  17651681 tatgaagcacggacacctttaggattaggcgtgtcgcggtgtccgacacgcgtcagtgtccgacactcttatgacacttgtacaacac-tgtcgaacaag 17651583  T
Q  218 tgtcctaaata 228  Q
    |||||||||||    
T  17651582 tgtcctaaata 17651572  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 38783555 - 38783619
Alignment:
Q  174 tgtccgacactcctatgacactcgtatgacacgtgtcggactagtgtcctaaataatttgttttc 238  Q
    ||||||||||||||||||||| ||||||||| ||||  ||| |||||| ||||||| || |||||    
T  38783555 tgtccgacactcctatgacacccgtatgacatgtgtgagacaagtgtcttaaataagttattttc 38783619  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 9930028 - 9929991
Alignment:
Q  173 gtgtccgacactcctatgacactcgtatgacacgtgtc 210  Q
    ||||||||||||||||||||||||||| || |||||||    
T  9930028 gtgtccgacactcctatgacactcgtacgaaacgtgtc 9929991  T

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Target: scaffold1723 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 185 - 232
Alignment:
Q  182 actcctatgacactcgtatgacacgtgtcggactagtgtcctaaataa 229  Q
    |||||||||| ||||||| |||| ||||||||| ||||||||||||||    
T  185 actcctatgagactcgtacgacatgtgtcggacaagtgtcctaaataa 232  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 32676423 - 32676464
Alignment:
Q  173 gtgtccgacactcctatgacactcgtatgacacgtgtcggac 214  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||    
T  32676423 gtgtccgacactcctatgacacttgtacgacacgtgttggac 32676464  T

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