View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1077_low_74 (Length: 235)

Name: NF1077_low_74
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1077_low_74
NF1077_low_74
[»] chr7 (5 HSPs)
chr7 (20-235)||(7699528-7699743)
chr7 (20-235)||(7713873-7714088)
chr7 (20-224)||(7727401-7727611)
chr7 (19-224)||(7731561-7731772)
chr7 (19-224)||(7739719-7739930)


Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 7699743 - 7699528
Alignment:
Q  20 ctccaaccatgtttctcctactgcacctaacacttctcttcctttcttccatctacttctccaaatcaaacgcaagtgatgacttcttctgcaacgccga 119  Q
    |||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7699743 ctccaaacatgtttctcctactccacttaacacttctcttcctttcttccatctacttctccaaatcaaacgcaagtgatgacttcttctgcaacgccga 7699644  T
Q  120 cgacaaagccgccctcctcaaaatcagagaccatttcggtggtcccaaaggccgcctcgacgattgggacaacaatacagaatgttgtgactggaacttc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||| ||||    
T  7699643 cgacaaagccgccctcctcaaaatcagagaccatttcggtggtcccaaaggccgcctcgacgactgggacaacaacaccgaatgttgtgactggagcttc 7699544  T
Q  220 gtcggttgcggcagac 235  Q
    ||||||||||||||||    
T  7699543 gtcggttgcggcagac 7699528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 7714088 - 7713873
Alignment:
Q  20 ctccaaccatgtttctcctactgcacctaacacttctcttcctttcttccatctacttctccaaatcaaacgcaagtgatgacttcttctgcaacgccga 119  Q
    |||||| ||||||| | |||||   |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7714088 ctccaaacatgtttatgctactcagcctaacactcttcttcctttcttccatctacttctccaaatcaaacgcaagtgatgacttcttctgcaacgccga 7713989  T
Q  120 cgacaaagccgccctcctcaaaatcagagaccatttcggtggtcccaaaggccgcctcgacgattgggacaacaatacagaatgttgtgactggaacttc 219  Q
    |||||||||||||||||||||||||||||||||||| || || || || ||||| || ||||| ||||||||||| || |||||||||||||||||||||    
T  7713988 cgacaaagccgccctcctcaaaatcagagaccattttggcggccctaacggccgtcttgacgactgggacaacaacactgaatgttgtgactggaacttc 7713889  T
Q  220 gtcggttgcggcagac 235  Q
    || |||||||||||||    
T  7713888 gtaggttgcggcagac 7713873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 7727611 - 7727401
Alignment:
Q  20 ctccaaccatgtttctcctactgcacctaacacttctcttcctttcttccatctacttctccaaatcaaacgcaagtgatg---acttcttctgcaacgc 116  Q
    |||||| || |||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||| ||   |||||   | |||| |||||| ||    
T  7727611 ctccaaacaagtttctcctactccacttaacacttctcttcctttcttccatctacttctccacatcaaatgctgatgatgttgagttctcctgcaatgc 7727512  T
Q  117 cgacgacaaagccgccctcctcaaaatcagagaccatttcggtggtcccaaaggccgcctcgacgattgggacaacaatacagaatgttgt---gactgg 213  Q
    | | ||||||||| | |||||||||||||||||||||||||| || ||||| |||||||||  |||||||||||||| |||||| ||||||   ||||||    
T  7727511 caatgacaaagccactctcctcaaaatcagagaccatttcggcggccccaacggccgcctctccgattgggacaacagtacagactgttgtagcgactgg 7727412  T
Q  214 aacttcgtcgg 224  Q
    | |||||||||    
T  7727411 agcttcgtcgg 7727401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 7731772 - 7731561
Alignment:
Q  19 actccaaccatgtttctcctactgcacctaacacttctcttcctttcttccatctacttctccaaatcaaacgcaagtgatg---acttcttctgcaacg 115  Q
    ||||||| ||||||||||||||| ||| | ||||| |||||||||||||||||||||||||||| |||||| ||   |||||   | |||| ||||||||    
T  7731772 actccaaacatgtttctcctactccacttgacactcctcttcctttcttccatctacttctccacatcaaatgctgatgatgttgagttctcctgcaacg 7731673  T
Q  116 ccgacgacaaagccgccctcctcaaaatcagagaccatttcggtggtcccaaaggccgcctcgacgattgggacaacaatacagaatgttgt---gactg 212  Q
    || | ||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||   |||||||||||||  |||||| ||||||   |||||    
T  7731672 ccaatgacaaagccaccctcctcaaaatcagagaccatttcggcggccccaacggccgcctttccgattgggacaacggtacagactgttgtagcgactg 7731573  T
Q  213 gaacttcgtcgg 224  Q
    || |||||||||    
T  7731572 gagcttcgtcgg 7731561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 7739930 - 7739719
Alignment:
Q  19 actccaaccatgtttctcctactgcacctaacacttctcttcctttcttccatctacttctccaaatcaaacgcaagtgatg---acttcttctgcaacg 115  Q
    ||||||| || |||||||||||| ||| | ||||| |||||||||||||||||||||||||||| |||||| ||   |||||   | |||| ||||||||    
T  7739930 actccaaacaagtttctcctactccacttgacactcctcttcctttcttccatctacttctccacatcaaatgctgatgatgttgagttctcctgcaacg 7739831  T
Q  116 ccgacgacaaagccgccctcctcaaaatcagagaccatttcggtggtcccaaaggccgcctcgacgattgggacaacaatacagaatgttgt---gactg 212  Q
    || | ||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||   |||||||||||||  |||||| ||||||   |||||    
T  7739830 ccaatgacaaagccaccctcctcaaaatcagagaccatttcggcggccccaacggccgcctttccgattgggacaacggtacagactgttgtagcgactg 7739731  T
Q  213 gaacttcgtcgg 224  Q
    || |||||||||    
T  7739730 gagcttcgtcgg 7739719  T

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