View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_75 (Length: 230)
Name: NF1077_low_75
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_75 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 27154627 - 27154842
Alignment:
| Q |
1 |
tccttgctacaccatagaaacaatgctcactccccagtttgctctcggtgtggtctctctgatgaaacttttctccattgtgtccgggattgtaatcact |
100 |
Q |
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| T |
27154627 |
tccttgctacaccatagaaacaatgctcactcccaagtttgctctcggtgtggtctctctgatgaaacttttctccattgtgtccgggattgtaatcact |
27154726 |
T |
|
| Q |
101 |
ctagacgtatttggcagcatctcaatttccatcagcttgatttcttcacaaataatgttactcatgattggattaagaagggatcgaccgttcctctatc |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27154727 |
ctagacgtatttggcagcatctcagtttccatcagcttgatttcttcacaaataatgttactcatgattggattaagaagggatcgaccgttcctctatc |
27154826 |
T |
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| Q |
201 |
ttttctttctgcaaca |
216 |
Q |
| |
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|||||||| ||||||| |
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| T |
27154827 |
ttttctttttgcaaca |
27154842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 24180705 - 24180600
Alignment:
| Q |
1 |
tccttgctacaccatagaaacaatgctcactccccagtttgctctcggtgtggtctctctgatgaaacttttctccattgtgtccgggattgtaatcact |
100 |
Q |
| |
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|||||||| |||||||||||| ||| |||| | ||||||||||| |||| | | | |||||||||||||||||||||||| |||||||||||||||| |
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| T |
24180705 |
tccttgctcaaccatagaaacattgcctactctctagtttgctctcagtgttgacccattgatgaaacttttctccattgtgtgcgggattgtaatcact |
24180606 |
T |
|
| Q |
101 |
ctagac |
106 |
Q |
| |
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|||||| |
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| T |
24180605 |
ctagac |
24180600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 38587168 - 38587275
Alignment:
| Q |
11 |
accatagaaacaatgctcactccccagtttgctctcggtgtggtctctctgatgaaacttttctccattgtgtccgggattgtaatcactctagacgtat |
110 |
Q |
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|||||||||||| ||||| ||||| ||||| ||||| ||||| ||| ||||||||||| ||||||||||| ||||||||| ||| |||| | |||| |
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| T |
38587168 |
accatagaaacattgctccttcccctgtttgttctcgatgtggcctccacgatgaaactttcctccattgtgtgcgggattgtgctcattctaaaagtat |
38587267 |
T |
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| Q |
111 |
ttggcagc |
118 |
Q |
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|||||||| |
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| T |
38587268 |
ttggcagc |
38587275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 18400715 - 18400787
Alignment:
| Q |
11 |
accatagaaacaatgctcactccccagtttgctctcggtgtggtctctctgatgaaacttttctccattgtgt |
83 |
Q |
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|||||||||||| ||||| ||||||||||| |||||| | || | | |||||||||||| ||||||||||| |
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| T |
18400715 |
accatagaaacattgctccttccccagtttgttctcggcgaggccaccatgatgaaactttcctccattgtgt |
18400787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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