View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_81 (Length: 204)
Name: NF1077_low_81
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_81 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 29820820 - 29820649
Alignment:
| Q |
1 |
gtacggttacttcttgtatttgtatattctaacagtttagagtctattctttattactcatcttgaccaattcttcctaatatcaaatgtcaagcatact |
100 |
Q |
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| T |
29820820 |
gtacggttacttcttgtatttgtatattctaacagtttagagtctattctttattactcatcttgaccaattcttcctaatatcaaatgtcaagcatact |
29820721 |
T |
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| Q |
101 |
catttgcatgagtttacctgtgttaaaaattcaaaatcacacatgtgttttgctttacctcatatttcatct |
172 |
Q |
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| T |
29820720 |
catttgcatgagtttacctgtgttaaaaattcaaaatcacacatgtgttttgctttacctcatatttcatct |
29820649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 29829007 - 29828932
Alignment:
| Q |
66 |
accaattcttcctaatatcaaatgtcaagcatactcatttgcatgagtttacctgtgttaaaaattcaaaatcaca |
141 |
Q |
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| T |
29829007 |
accaattctgcctaatatcaaatgtcaagcatattcttttacatgggtttaactttattaaaaattgaaaatcaca |
29828932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 29571408 - 29571445
Alignment:
| Q |
102 |
atttgcatgagtttacctgtgttaaaaattcaaaatca |
139 |
Q |
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| T |
29571408 |
atttgtatgagtttaactgtgttaaaaattcaaaatca |
29571445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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