View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1077_low_9 (Length: 517)
Name: NF1077_low_9
Description: NF1077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1077_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 60 - 440
Target Start/End: Original strand, 41170253 - 41170633
Alignment:
| Q |
60 |
tagctgttgccaccgagaaggtaattgatggttgtttaacagtcattttacaaaatactcaatccttttgtgtggctatagggcttgatgactccaaatt |
159 |
Q |
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| T |
41170253 |
tagcagttgccaccgagaaggtaattgatggttgtttaacagtcattttacaaaatactcaatccttttgtgtggatatagggcttgatgactccaaatt |
41170352 |
T |
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| Q |
160 |
ttacaaaatactcgatccttttgtgtggctatagggcttgatgactccaatattaaaaaatgcggatcacaagacaatatctgccatctcctcagaggta |
259 |
Q |
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| T |
41170353 |
ttacaaaatactcgatccttttgtgtggctatagggcttgatgactccaatattaaaaaatgcagatcacaagacaatatctgccatctcctcagaggta |
41170452 |
T |
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| Q |
260 |
attttatgtcattgacatgggttcctacttaatgttttttcaggaatcttgattgtttgtgtttaggcatttttatttgaaattttaatacattagtgat |
359 |
Q |
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| T |
41170453 |
attttatgtcattgacatgggttcctacttaatgttttttcaggaatcttgattgtttgtgtttaggcatttttatttgaaattttaatacattagtggt |
41170552 |
T |
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| Q |
360 |
actttaggtcaaggagctagctgcaaaagctcgtgaagggaaattgaagccgcaagaatttcaaggggggacttttaggtg |
440 |
Q |
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| T |
41170553 |
actttaggtcaaggagctagctgcaaaagctcgtgaagggaaattgaagccgcaagaatttcaaggggggacttttaggtg |
41170633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 47447086 - 47447029
Alignment:
| Q |
431 |
cttttaggtgctctgaatgaattgttgattcttacacgtgttgactggctgatgcaac |
488 |
Q |
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| T |
47447086 |
cttttaggtgctctgagtgaattgttgattcttacacgtgttggctggctgatgcaac |
47447029 |
T |
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