View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10780_2 (Length: 460)
Name: NF10780_2
Description: NF10780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10780_2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 24 - 460
Target Start/End: Original strand, 6315042 - 6315479
Alignment:
| Q |
24 |
tcatcatgtgcagagtttatttttactgtcatcaacaactgcacaacaatgattatgaatggtttaactatggtgttgtggaatatatggaagagaagaa |
123 |
Q |
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| T |
6315042 |
tcatcatgtgcagaatttatttttactgtcatcaacaactgcacaacaatgattatgaatggtttaactatggtgttgtggaatatatggaagagaagaa |
6315141 |
T |
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| Q |
124 |
gtaagcagctttggaatatgcctggcaacaatccaacaagctatttagttccctgttgttttgaaatggcaaaagaaaaagcagcaaaatacttagaatt |
223 |
Q |
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| T |
6315142 |
gtaagcagctttggaatatgcctggcaacaatccaacaagctatttagttccctgttgttttgaaatggcaaaagaaaaagcagcaaaatacttagaatt |
6315241 |
T |
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| Q |
224 |
tggagattaacacgaggcatatagtagatggaaaaaaccacaacaggggtacttgtcatatggcaacaggtggattagtagcaacggagacttgttgggc |
323 |
Q |
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| T |
6315242 |
tggagattaacacgaggcatatagtagatggaaaagaccacaacaggggtacttgtcatatggcaacaggtggattagtagcaacggagacttgttgggc |
6315341 |
T |
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| Q |
324 |
ggat-ggatccctttacaaatgaagatgaagtgatggctttatggagggttatggagtgagcaaatagtacggggacaattgtgactgactgcaaattgg |
422 |
Q |
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| T |
6315342 |
agatgggatccctttacaaatgaagatgaagtgacggctttatggagggttatggagtgagcaaatagtacggggacaattgtgactgactgcaaattgg |
6315441 |
T |
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| Q |
423 |
ttgttaatacaatggctcatagtttttggctataactg |
460 |
Q |
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| T |
6315442 |
ttgttaatacaatggctcatagtttttggctataactg |
6315479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 6318172 - 6318236
Alignment:
| Q |
24 |
tcatcatgtgcagag--tttatttttactgtcatcaacaactgcacaacaatgattatgaatggt |
86 |
Q |
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| T |
6318172 |
tcatcatgtggagagaatttaattttactgtcatcaacagctgcacaacaaggattatgaatggt |
6318236 |
T |
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