View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10780_low_1 (Length: 277)
Name: NF10780_low_1
Description: NF10780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10780_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 51212533 - 51212803
Alignment:
| Q |
1 |
gcatttcctgaactttcctatgctgtttaacgtattgatatctgcttgaggatatttaaaccagtgatcgtatgatttcttgaggttatctcaattacta |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51212533 |
gcatttcctgaactttcctatgctgtttaatgtattgatatctgcttgaggatatttaaaccagtgatcgtatgatttcttgaggttatctcaattacta |
51212632 |
T |
|
| Q |
101 |
ctactctgcaggtttcacaatgttctttgagggacctacttttgcaatgttgtactgatgatgctcacgatgttcgccaaagtgcatttgccttacttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51212633 |
ctactctgcaggtttcacaatgttctttgagggacctactgttgcaatgttgtactgatgatgctcacgatgttcgccaaagtgcatttgccttacttgg |
51212732 |
T |
|
| Q |
201 |
agaccttgctcgagtaagtttaatgtgtatttgcatactttatactgaagccctcacatgcactgcctatg |
271 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
51212733 |
agaccttgctcgagtaagtttaatttgtatttgcatactttatactgaagccctcccatgcactgcctatg |
51212803 |
T |
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