View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10780_low_2 (Length: 248)

Name: NF10780_low_2
Description: NF10780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10780_low_2
NF10780_low_2
[»] chr5 (11 HSPs)
chr5 (114-248)||(39476806-39476940)
chr5 (19-245)||(39484562-39484782)
chr5 (19-131)||(39476957-39477069)
chr5 (141-248)||(39487759-39487866)
chr5 (135-248)||(39452294-39452407)
chr5 (148-248)||(39463336-39463436)
chr5 (134-248)||(39455922-39456036)
chr5 (152-248)||(39473324-39473420)
chr5 (142-233)||(39457068-39457159)
chr5 (134-248)||(39461547-39461660)
chr5 (148-248)||(43311309-43311409)


Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 114 - 248
Target Start/End: Complemental strand, 39476940 - 39476806
Alignment:
Q  114 ccaataccctccaaccttatatactaggataatttaatttcatacctcatacataatataatcaatcaaacgacctaaataattgtaagaagatccacct 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39476940 ccaataccctccaaccttatatactaggataatttaatttcatacctcatacataatataatcaatcaaacgacctaaataattgtaagaagatccacct 39476841  T
Q  214 tctaacaaagtcttcttactcttttcactcatctc 248  Q
    |||||||||||||||||||||||||||||||||||    
T  39476840 tctaacaaagtcttcttactcttttcactcatctc 39476806  T

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Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 39484782 - 39484562
Alignment:
Q  19 atcactagtaggaacagctaaaatgaacaagactttcagccaagtgaaattggctaatccttgttatactatatagattagtgttgaaaattaaaccaat 118  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| |     |||||||||||||||||||||||||    
T  39484782 atcactagtaggaacagctgaaatgaaca-gactttcagccaagtgaaattggctaatccttattatatt-----gattagtgttgaaaattaaaccaat 39484689  T
Q  119 accctccaaccttatatactaggataatttaatttcatacctcatacataatataatcaatcaaacgacctaaataattgtaagaagatccaccttctaa 218  Q
    |||||| |||||||| |||| | |||||||||||| |||||| || ||||||||||||||||| | ||||||||||| |||| ||||||||||| |||||    
T  39484688 accctcaaaccttatttactcgaataatttaatttgatacctgattcataatataatcaatcagatgacctaaataagtgtaggaagatccaccctctaa 39484589  T
Q  219 caaagtcttcttactcttttcactcat 245  Q
    |||||||||| ||||||| ||||||||    
T  39484588 caaagtcttcctactcttctcactcat 39484562  T

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Target: chr5; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 39477069 - 39476957
Alignment:
Q  19 atcactagtaggaacagctaaaatgaacaagactttcagccaagtgaaattggctaatccttgttatactatatagattagtgttgaaaattaaaccaat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39477069 atcactagtaggaacagctaaaatgaacaagactttcagccaagtgaaattggctaatccttgttatattatatagattagtgttgaaaattaaaccaat 39476970  T
Q  119 accctccaacctt 131  Q
    |||||||||||||    
T  39476969 accctccaacctt 39476957  T

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Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 141 - 248
Target Start/End: Complemental strand, 39487866 - 39487759
Alignment:
Q  141 gataatttaatttcatacctcatacataatataatcaatcaaacgacctaaataattgtaagaagatccaccttctaacaaagtcttcttactcttttca 240  Q
    ||||||||||||| |||||| || ||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||    
T  39487866 gataatttaatttgatacctgattcataatataatcaatcaaatgacctaaataagtgtaggaagatccaccctctaacaaagtcttcttactcttttca 39487767  T
Q  241 ctcatctc 248  Q
    ||||||||    
T  39487766 ctcatctc 39487759  T

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Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 135 - 248
Target Start/End: Complemental strand, 39452407 - 39452294
Alignment:
Q  135 tactaggataatttaatttcatacctcatacataatataatcaatcaaacgacctaaataattgtaagaagatccaccttctaacaaagtcttcttactc 234  Q
    |||||||||| |||||||||||||||  | ||||||||||||||| ||||||| ||||||| || | |||||||| |||||||||| |||||||||||||    
T  39452407 tactaggatagtttaatttcatacctggttcataatataatcaattaaacgacttaaataaatggaggaagatcctccttctaacagagtcttcttactc 39452308  T
Q  235 ttttcactcatctc 248  Q
    ||||||||||||||    
T  39452307 ttttcactcatctc 39452294  T

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Target: chr5; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 39463336 - 39463436
Alignment:
Q  148 taatttcatacctcatacataatataatcaatcaaacgacctaaataattgtaagaagatccaccttctaacaaagtcttcttactcttttcactcatct 247  Q
    |||| |||||||||||  |||||||||||||||||||||||||||||| |||| |||||||| || |||||||||||||||||||| |||||||||||||    
T  39463336 taatctcatacctcatcaataatataatcaatcaaacgacctaaataagtgtaggaagatcctccctctaacaaagtcttcttacttttttcactcatct 39463435  T
Q  248 c 248  Q
    |    
T  39463436 c 39463436  T

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Target: chr5; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 39456036 - 39455922
Alignment:
Q  134 atactaggataatttaatttcatacctcatacataatataatcaatcaaacgacctaaataattgtaagaagatccaccttctaacaaagtcttcttact 233  Q
    ||||| ||| |||||||||| ||||||  | ||||||||||||||| ||||||||||||||| || |||||||||| || ||||||||||||||||| ||    
T  39456036 atacttggacaatttaatttgatacctggttcataatataatcaattaaacgacctaaataagtggaagaagatcctccctctaacaaagtcttcttgct 39455937  T
Q  234 cttttcactcatctc 248  Q
    |||||||||||||||    
T  39455936 cttttcactcatctc 39455922  T

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Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 39473420 - 39473324
Alignment:
Q  152 ttcatacctcatacataatataatcaatcaaacgacctaaataattgtaagaagatccaccttctaacaaagtcttcttactcttttcactcatctc 248  Q
    ||||||||| || |||||||||||||| ||| |||||||||||   |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39473420 ttcatacctgattcataatataatcaaccaatcgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctc 39473324  T

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Target: chr5; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 39457068 - 39457159
Alignment:
Q  142 ataatttaatttcatacctcatacataatataatcaatcaaacgacctaaataattgtaagaagatccaccttctaacaaagtcttcttact 233  Q
    |||||||| ||| |||||| |||| |||||||||| |||||||||||||||||| |||| |||||||| || ||||||| ||||||||||||    
T  39457068 ataatttattttgatacctgatacctaatataatcgatcaaacgacctaaataagtgtaggaagatcctccatctaacagagtcttcttact 39457159  T

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Target: chr5; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 39461660 - 39461547
Alignment:
Q  134 atactaggataatttaatttcatacctcatacataatataatcaatcaaacgacctaaataattgtaagaagatccaccttctaacaaagtcttcttact 233  Q
    |||||||||||||||| || ||||  | || || |||| |||| || ||||||||||||| | |||||||||||||||| ||||||||||| ||| ||||    
T  39461660 atactaggataatttagtt-catatttgattcacaataaaatctattaaacgacctaaatgactgtaagaagatccaccctctaacaaagttttcctact 39461562  T
Q  234 cttttcactcatctc 248  Q
    |||||||||||||||    
T  39461561 cttttcactcatctc 39461547  T

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Target: chr5; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 43311309 - 43311409
Alignment:
Q  148 taatttcatacctcatacataatataatcaatcaaacgacctaaataattgtaagaagatccaccttctaacaaagtcttcttactcttttcactcatct 247  Q
    ||||||||||| | || |||||||||||||||||||| ||||||  || |||| ||||||||||| |||||||| |||||| |||  | |||||||||||    
T  43311309 taatttcatacatgattcataatataatcaatcaaactacctaagcaagtgtaggaagatccaccctctaacaatgtcttcctacaatgttcactcatct 43311408  T
Q  248 c 248  Q
    |    
T  43311409 c 43311409  T

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