View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10780_low_3 (Length: 215)
Name: NF10780_low_3
Description: NF10780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10780_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 30087588 - 30087742
Alignment:
| Q |
19 |
cttaggtcctgagttacctgcagaagatgaaacaacaatccctttctccatagctgcaaaagaagctattgctatagcatcttcataatgtggaatatca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
30087588 |
cttaggtcctgagttacctgcagaagatgaaacaacaatccctttctccatagctgtaaaagaagctattgctatagcatcttcataaagtggaatacca |
30087687 |
T |
|
| Q |
119 |
tcaattccaatagaaattgaaatcacgtcaacaccatcaataattgcttggtcca |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30087688 |
tcaattccaatagaaattgaaatcacgtcaacaccatcaataattgcttggtcca |
30087742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 30091568 - 30091722
Alignment:
| Q |
19 |
cttaggtcctgagttacctgcagaagatgaaacaacaatccctttctccatagctgcaaaagaagctattgctatagcatcttcataatgtggaatatca |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | || |
|
|
| T |
30091568 |
cttaggtcctgagttacctgcagaagacgaaacaacaatccctttctccatagctgcaaaagaagctattgctatagcatcttcataaagtggaacacca |
30091667 |
T |
|
| Q |
119 |
tcaattccaatagaaattgaaatcacgtcaacaccatcaataattgcttggtcca |
173 |
Q |
| |
|
|||| ||| ||||||||||||||||| |||||||||||| ||| |||||||||| |
|
|
| T |
30091668 |
tcaaatcccatagaaattgaaatcacatcaacaccatcagcaatagcttggtcca |
30091722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 22 - 173
Target Start/End: Complemental strand, 30099342 - 30099191
Alignment:
| Q |
22 |
aggtcctgagttacctgcagaagatgaaacaacaatccctttctccatagctgcaaaagaagctattgctatagcatcttcataatgtggaatatcatca |
121 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||| |||||| ||||||| |
|
|
| T |
30099342 |
aggtcctgcgttacctgcagaagatgaaacaacaatccctttttccatagctgcaaatgaagctattgctataggatcttcataaagtggaacatcatca |
30099243 |
T |
|
| Q |
122 |
attccaatagaaattgaaatcacgtcaacaccatcaataattgcttggtcca |
173 |
Q |
| |
|
| ||| || |||||||||||||| |||||||| || |||| |||||||||| |
|
|
| T |
30099242 |
aatcccattgaaattgaaatcacatcaacaccgtcgttaatagcttggtcca |
30099191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 8946567 - 8946639
Alignment:
| Q |
32 |
ttacctgcagaagatgaaacaacaatccctttctccatagctgcaaaagaagctattgctatagcatcttcat |
104 |
Q |
| |
|
|||||||| ||| | || |||| ||| ||||| ||||||||||||||||| |||||||| || | |||||||| |
|
|
| T |
8946567 |
ttacctgctgaacaagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcat |
8946639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University