View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10781_high_4 (Length: 238)
Name: NF10781_high_4
Description: NF10781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10781_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 43393848 - 43393750
Alignment:
| Q |
1 |
ttttctttacattttccaagtatattgtaaaacattaatcaagttatttgagaaccaaacataaaccagaaatgtatctaaatatttttccaaagaagg |
99 |
Q |
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| T |
43393848 |
ttttctttatattttccaggtatattgtaaaacattaatcaagttatttgagaaccaaacataaaccagtaatgtatctaaatatttttccaaagaagg |
43393750 |
T |
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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 43393670 - 43393626
Alignment:
| Q |
180 |
tatttcctggtatgtgtttccgaatttattctctctttccctctt |
224 |
Q |
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| T |
43393670 |
tatttcctggtatgtgtttccgaatttattctctctttccctctt |
43393626 |
T |
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