View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10781_low_1 (Length: 480)
Name: NF10781_low_1
Description: NF10781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10781_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 111 - 401
Target Start/End: Complemental strand, 8322723 - 8322436
Alignment:
| Q |
111 |
gtttcaacgttaaacaataatttttcttacatattaatgttaattgtttattgtaggccaaaatgtttcactacatgagatttttgtttgcacagttatt |
210 |
Q |
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| T |
8322723 |
gtttcaacgttaaacaataatttttcttacatattaatgttaattgattattgtaggccaaaatgtttcactacatgagatttttgtttgcacagttatt |
8322624 |
T |
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| Q |
211 |
ccatattattaatgcaaacttaatgccacactatacgagattatgcatctaataactctacttaatattgtcttccaattaaaattattatcagcagtgc |
310 |
Q |
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| T |
8322623 |
ccatattattaatgcaaacttaatgccacattatacgagattatgcatc---taactctacttaatattgtcttccaattaaaattattatcagcagtac |
8322527 |
T |
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| Q |
311 |
taagtcccttccaagagataatactaacagaggttatgctttcgaaagttgtaggatactcaactaccaaatatttgttaataataataat |
401 |
Q |
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| T |
8322526 |
taagtcccttccaagagataatactaacagaggttatgctttcgaaagttgtaggatactcaactaccaaatatttgttaataataataat |
8322436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 444 - 474
Target Start/End: Complemental strand, 8322373 - 8322343
Alignment:
| Q |
444 |
tttcatgtagtgcaatattaagtgaacaaca |
474 |
Q |
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| T |
8322373 |
tttcatgtagtgcaatattaagtgaacaaca |
8322343 |
T |
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