View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10781_low_2 (Length: 339)
Name: NF10781_low_2
Description: NF10781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10781_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 3685445 - 3685619
Alignment:
| Q |
1 |
tatatatggaatacctctttcaaccactgcattcttcttctcctctcactcggttacacttggtcctcatatcatgattaattctagcaacagtttatgt |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3685445 |
tatatatggaacacctctttcaaccactgcattcttcttctcctctcactcggttacacttggtcctcatatcatgattaattgtagcaacagtttatgt |
3685544 |
T |
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| Q |
101 |
aacttttaataatgtctctcaaattctgtttattggaatattatttagattattctatttttatgcataccaaaa |
175 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3685545 |
aacttttaataatgtctctcaaattctgtttattggaatattatttagattattctatttttatgcataccaaaa |
3685619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 3693121 - 3693334
Alignment:
| Q |
1 |
tatatatggaatacctctttcaaccactgc----attcttcttctcctctcactcggttacacttggtcctcatatcat-gattaattctagcaacagtt |
95 |
Q |
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|||||||| ||||||||||||||||||| | |||||||||||||||||||||||| |||||| ||||||||||||| |||||||| ||||||||||| |
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| T |
3693121 |
tatatatgaaatacctctttcaaccactccttccattcttcttctcctctcactcggtcacacttcgtcctcatatcattgattaattgtagcaacagtt |
3693220 |
T |
|
| Q |
96 |
tatgtaacttttaataatgtctctcaaattctgtttattggaatattatttagattattctatttttatgcataccaaaaaggttattcttattttaatt |
195 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3693221 |
tatgtaacttttaataatgtctt--aaattatgtttattggaatattatttagattatgctatttttacgcataccaaaaaggttattcttattttaatt |
3693318 |
T |
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| Q |
196 |
gaattatagattatat |
211 |
Q |
| |
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|||||||||| ||||| |
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| T |
3693319 |
gaattatagagtatat |
3693334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 3702931 - 3703107
Alignment:
| Q |
30 |
cattcttcttctcctctcactcggttacacttggtcctcatatcatgattaattctagcaacagtttatgtaacttttaataatgtctctcaaattctgt |
129 |
Q |
| |
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|||| |||||||| |||||||| || || ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3702931 |
cattgttcttctcgtctcactcagtcactcttggtcctcatatcatgattaattgtggcaacagtttatgtaacttttaataatgtctc--aaattctgt |
3703028 |
T |
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| Q |
130 |
ttattggaatattatttagattattctatttttatgcataccaaaaaggttattcttattttaattgaattatagattatat |
211 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3703029 |
ttattgggatatt---tagattattctatttttatgcataccaaaaaggttattcttattttaattgaattatagataatat |
3703107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 208 - 324
Target Start/End: Original strand, 3685914 - 3686030
Alignment:
| Q |
208 |
atataagatgagagggccgaaaataaaggataatgatatttgcatcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggt |
307 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3685914 |
atataagaggagagggccgaaaataaaggataatgatatttgcatcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggt |
3686013 |
T |
|
| Q |
308 |
tcttataacacatacac |
324 |
Q |
| |
|
|||| |||||||||||| |
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|
| T |
3686014 |
tcttttaacacatacac |
3686030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 3705862 - 3706012
Alignment:
| Q |
30 |
cattcttcttctcctctcactcggttacacttggtcctcatatcatgattaattctagcaacagtttatgtaacttttaataatgtctctcaaattctgt |
129 |
Q |
| |
|
|||| ||||||||||||||||| || | |||||||||| |||||| ||||||| |||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
3705862 |
cattgttcttctcctctcactcagtcattcttggtcctcttatcattattaattgtagcaacagtttatgtaacttttaataatg--tctcaacttctgt |
3705959 |
T |
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| Q |
130 |
ttattggaatattat-----ttagattattctatttttatgcataccaaaaag |
177 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| ||| ||||||||||| |
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| T |
3705960 |
ttattggaatgttatttagattagattattctattttcatgtataccaaaaag |
3706012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 207
Target Start/End: Original strand, 3700673 - 3700793
Alignment:
| Q |
89 |
aacagtttatgtaacttttaataatgtctctcaaattctgtttattggaatatt-atttagatta-----ttctatttttatgcataccaaaaaggttat |
182 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| |||||||||||||||| |||||||||| ||||||||||||| ||||||| |||||||| |
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| T |
3700673 |
aacagtttatgtaactttt--taatgtctc--aaattatgtttattggaatatttatttagattaaactattctatttttatgtataccaataaggttat |
3700768 |
T |
|
| Q |
183 |
tcttattttaattgaattatagatt |
207 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
3700769 |
tcttattttaattgaattatagatt |
3700793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 208 - 324
Target Start/End: Original strand, 3693681 - 3693797
Alignment:
| Q |
208 |
atataagatgagagggccgaaaataaaggataatgatatttgcatcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattgg- |
306 |
Q |
| |
|
|||||||| | ||||||||||| |||||||||||||||||| | |||||||||| ||||| |||||||| ||||||||| ||||||||||||||||| |
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| T |
3693681 |
atataagacgcgagggccgaaattaaaggataatgatatttcta-cgaagaatattgatcaataacgcatcacgaactgatttggcagtaagtgattggt |
3693779 |
T |
|
| Q |
307 |
ttcttataacacatacac |
324 |
Q |
| |
|
|||||||||||||||||| |
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| T |
3693780 |
ttcttataacacatacac |
3693797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 3694957 - 3695027
Alignment:
| Q |
64 |
tcctcatatcatgattaattctagcaacagtttatgtaacttttaataatgtctctcaaattctgtttattgga |
137 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
3694957 |
tcctcatatcatgattaattgtagcaacagtttatgtaacttttaataatgtctc---aaatctgtttattgga |
3695027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 3675510 - 3675571
Alignment:
| Q |
231 |
taaaggataatgatatttgcatcgaagaatatagatcacgaacgcatcgcgaactgatgtgg |
292 |
Q |
| |
|
|||||| |||||||||||| | |||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
3675510 |
taaaggttaatgatatttgtagcgaagaatatagatcacgaacgcatcacaaactgatgtgg |
3675571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 208 - 324
Target Start/End: Original strand, 3679151 - 3679267
Alignment:
| Q |
208 |
atataagatgagagggccgaaaataaaggataatgatatttgcatcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattgg- |
306 |
Q |
| |
|
|||||||| | ||||||||||| |||||||||||||||||| | |||||| ||| || | |||||||| |||| |||| |||||| |||||||||| |
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| T |
3679151 |
atataagaggcgagggccgaaatcaaaggataatgatatttgta-cgaagagtattcataaaaaacgcatcacgaattgatttggcagcaagtgattggt |
3679249 |
T |
|
| Q |
307 |
ttcttataacacatacac |
324 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
3679250 |
ttcttataacacatacac |
3679267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 3651521 - 3651479
Alignment:
| Q |
74 |
atgattaattctagcaacagtttatgtaacttttaataatgtc |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
3651521 |
atgattaattgtagcaacagtttatgtaacttttaataatgtc |
3651479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 204
Target Start/End: Complemental strand, 1287457 - 1287426
Alignment:
| Q |
173 |
aaaaggttattcttattttaattgaattatag |
204 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
1287457 |
aaaaggttattcttattttaattgaattatag |
1287426 |
T |
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Back To:
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