View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10781_low_3 (Length: 278)
Name: NF10781_low_3
Description: NF10781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10781_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 39264873 - 39264614
Alignment:
| Q |
1 |
gaaagagcctataacgccattaatcactgaatttccaacaatgaaattaggcacaagagcactgaaacaaaccacaactgaattggctgtataaagaaca |
100 |
Q |
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| T |
39264873 |
gaaagagcctataacgccattaatcactgaatttccaacaatgaaattaggcacaagagcactgaaacaaaccacaactgaattggctgtataaagaaca |
39264774 |
T |
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| Q |
101 |
agccatatcagtaacagaaagtgcaaaaaagcagtgaagtttgtgttgagaccaacaagccagtataaaggaactgtgaacaaaatggctaggattagaa |
200 |
Q |
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| T |
39264773 |
agccatatcagtaacagaaagtgcaaaaaagcagtgaagtttgtgttgagaccaacaagccagtataaaggaactgtgaacaaaatggctaggattagaa |
39264674 |
T |
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| Q |
201 |
gaaatggcaagtaaactaagccatttgcaatagcataagatgatacgcggtagcttccac |
260 |
Q |
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| T |
39264673 |
gaaatggcaagtaaactaagccatttgcaatagcataagatgatacgcggtagcttccac |
39264614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 29 - 261
Target Start/End: Complemental strand, 44068563 - 44068331
Alignment:
| Q |
29 |
gaatttccaacaatgaaattaggcacaagagcactgaaacaaaccacaactgaattggctgtataaagaacaagccatatcagtaacagaaagtgcaaaa |
128 |
Q |
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| T |
44068563 |
gaatttccaacaatgaaattaggcaccagagcactgaaacagaccacaaccgagtttgcggtatacaaaaccagccatattagcaacaaaaagtgcaaaa |
44068464 |
T |
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| Q |
129 |
aagcagtgaagtttgtgttgagaccaacaagccagtataaaggaactgtgaacaaaatggctaggattagaagaaatggcaagtaaactaagccatttgc |
228 |
Q |
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| T |
44068463 |
acgctgtgaaattttggttgagaccgataatccagtaaagcggcactgcgaataaaatggctagtatgagtagaaatggcaagtaaactaggccattggc |
44068364 |
T |
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| Q |
229 |
aatagcataagatgatacgcggtagcttccact |
261 |
Q |
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| T |
44068363 |
aatagcataagatgaaactctgtagcttccact |
44068331 |
T |
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