View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10781_low_8 (Length: 250)
Name: NF10781_low_8
Description: NF10781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10781_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 48565426 - 48565207
Alignment:
| Q |
17 |
catcatggttagactagactgtagaaatctcggaaattcactagcggtatttaaataactcagattaaatgaaaaagacttatgttagttagcatgcaga |
116 |
Q |
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| T |
48565426 |
catcatggttagactagactgtagaaatctcggaaattcactagcggtatttaa----ctcagattaaatgaaaa-gacttatgttagttagcatgtaga |
48565332 |
T |
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| Q |
117 |
agtcatcaaatgtttagtttttataagtttgcaccgcaagataatgtaaatcaatatgaactaacaaaaaataattttattaaactaccaagtgaatcgg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48565331 |
agtcatcaaatgtttagtttttataagtttgcaccgcaagataatgtaaatcaatatgaactaacaaaaaataattttattaaactaccaagtgaatcgg |
48565232 |
T |
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| Q |
217 |
tatgcatttgctttcctatgctact |
241 |
Q |
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|||||||||||||||||||| |||| |
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| T |
48565231 |
tatgcatttgctttcctatgatact |
48565207 |
T |
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