View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10781_low_9 (Length: 249)
Name: NF10781_low_9
Description: NF10781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10781_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 41116915 - 41117132
Alignment:
| Q |
19 |
aagaggaatgtccttcccagttgaatctagcagacctactgcaataggaatgaacatgggttccttaactgactgccctggtgttggtggtatctcttga |
118 |
Q |
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| T |
41116915 |
aagaggaatgtccttcccagttgaatctagcagacctactgcaataggaatgaacatgggttccttaactgactgccctggagttggtggtatctcttga |
41117014 |
T |
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| Q |
119 |
ctgcaaaaatgtcccccatcaaacatgttatcaactataaataatcaaaaatagaagtcaaaatttggttacgttcaacccaatcagaaagaaatgaaaa |
218 |
Q |
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| T |
41117015 |
ctgcaaaaatgt-ccccatcaaacatgttatcaactataaataatcaaaaatagaagtcaaaatttggttacgttcaacccaatcagaaagaaatgaaaa |
41117113 |
T |
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| Q |
219 |
gtaaaagtttgtatgccta |
237 |
Q |
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| T |
41117114 |
gttaaagtttgtatgccta |
41117132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 41104709 - 41104931
Alignment:
| Q |
19 |
aagaggaatgtccttcccagttgaatctagcagacctactgcaataggaatgaacatgggttccttaactgactgccctggtgttggtggtatctcttga |
118 |
Q |
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||||||||||||||| ||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||| |
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| T |
41104709 |
aagaggaatgtccttgccagttgaatcaagcaaacctactgcaataggaataaacatgggttccttaactgactgccctggagttggcgggatctcttga |
41104808 |
T |
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| Q |
119 |
ctgcaaaaatgtcccccatcaaacatgttatc----aactataaataatcaaaaat-agaagtcaaaatttggttacgttcaacccaatcagaaagaaat |
213 |
Q |
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|||||||||||| | ||||||||||||||| | | ||||||||||| |||| |||||||||||||| | || || |||||||||||| |||||| |
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| T |
41104809 |
ctgcaaaaatgt-cgccatcaaacatgttaacggagataaataaataatcataaatcagaagtcaaaatttaatcacctttaacccaatcagagagaaat |
41104907 |
T |
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| Q |
214 |
gaaaagtaaaagtttgtatgccta |
237 |
Q |
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|||||| |||||||||| |||| |
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| T |
41104908 |
aaaaagttgaagtttgtataccta |
41104931 |
T |
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