View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10782_high_9 (Length: 229)

Name: NF10782_high_9
Description: NF10782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10782_high_9
NF10782_high_9
[»] chr4 (1 HSPs)
chr4 (6-229)||(7100467-7100690)
[»] chr2 (7 HSPs)
chr2 (168-222)||(4969273-4969328)
chr2 (127-217)||(1602832-1602920)
chr2 (169-225)||(13089623-13089679)
chr2 (168-216)||(20586461-20586509)
chr2 (168-225)||(19193120-19193177)
chr2 (158-214)||(10109970-10110027)
chr2 (178-214)||(30466594-30466630)
[»] chr7 (4 HSPs)
chr7 (29-86)||(45312218-45312275)
chr7 (125-224)||(25079785-25079884)
chr7 (170-220)||(36742051-36742101)
chr7 (139-216)||(37327348-37327425)
[»] chr1 (6 HSPs)
chr1 (169-216)||(27879466-27879513)
chr1 (29-77)||(43926447-43926495)
chr1 (171-218)||(45090245-45090292)
chr1 (122-213)||(46562043-46562133)
chr1 (140-225)||(28081128-28081214)
chr1 (153-209)||(25291435-25291491)
[»] chr3 (5 HSPs)
chr3 (31-81)||(44200671-44200721)
chr3 (27-75)||(54223458-54223506)
chr3 (29-93)||(54325090-54325154)
chr3 (187-221)||(49519196-49519230)
chr3 (168-225)||(38745824-38745881)
[»] chr6 (3 HSPs)
chr6 (168-225)||(7107869-7107926)
chr6 (168-225)||(8786704-8786761)
chr6 (128-216)||(28587656-28587743)
[»] chr5 (1 HSPs)
chr5 (30-94)||(27356521-27356585)
[»] chr8 (3 HSPs)
chr8 (173-218)||(14954113-14954159)
chr8 (137-187)||(36632685-36632735)
chr8 (38-94)||(24760667-24760724)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 7100467 - 7100690
Alignment:
Q  6 aactcacacattatagggtttcaggttcgaacccggatgaaggtgtccaacctaacaatttcggcattgcaagttgagctagactttaccaactaattaa 105  Q
    |||||||| ||||||||||||| ||| | ||||||| |||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  7100467 aactcacatattatagggtttcgggtccaaacccgggtgaaggtggccaacctaacaatttcggcattgccagttgagttagactttaccaactaattaa 7100566  T
Q  106 tattaatttcactgttttgtagatttggtcgctctatttcaaaatccgacaattttagtctgtccatcatatttttgaactaaaaattgatgatgtgata 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7100567 tattaatttcactgttttgtagatttggtcgctctatttcaaaatctgacaattttagtttgtccatcatatttttgaactaaaaattgatgatgtgata 7100666  T
Q  206 tgttttaaatgatgtggtatttgt 229  Q
    ||||||||||||||||||||||||    
T  7100667 tgttttaaatgatgtggtatttgt 7100690  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 4969328 - 4969273
Alignment:
Q  168 tccatcatatttttgaact-aaaaattgatgatgtgatatgttttaaatgatgtgg 222  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  4969328 tccatcatatttttaaacttaaaaattgatgatgtgatatgttttaaatgatgtgg 4969273  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 1602920 - 1602832
Alignment:
Q  127 gatttggtcgctctatttcaaaatccgacaattttagtctgtccatcatatttttgaactaaaaattgatgatgtgatatgttttaaatga 217  Q
    ||||||||| | |||||| |||||| ||||||||| |||| |||| ||||||||| ||||||||||||  |||||||||||||||||||||    
T  1602920 gatttggtccccctattttaaaatctgacaattttggtct-tcca-catattttttaactaaaaattggggatgtgatatgttttaaatga 1602832  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 13089679 - 13089623
Alignment:
Q  169 ccatcatatttttgaactaaaaattgatgatgtgatatgttttaaatgatgtggtat 225  Q
    |||||||||||||  ||||||||||||||||||||| ||||||||||||||| ||||    
T  13089679 ccatcatatttttatactaaaaattgatgatgtgatgtgttttaaatgatgttgtat 13089623  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 20586509 - 20586461
Alignment:
Q  168 tccatcatatttttgaactaaaaattgatgatgtgatatgttttaaatg 216  Q
    ||||||||||||||||||||||||  | |||||||||||||||||||||    
T  20586509 tccatcatatttttgaactaaaaaaaggtgatgtgatatgttttaaatg 20586461  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 19193177 - 19193120
Alignment:
Q  168 tccatcatatttttgaactaaaaattgatgatgtgatatgttttaaatgatgtggtat 225  Q
    |||||||||||||||||| |||||| || ||||| ||||||||||||| | |||||||    
T  19193177 tccatcatatttttgaacaaaaaatcgacgatgtaatatgttttaaattacgtggtat 19193120  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 10110027 - 10109970
Alignment:
Q  158 ttttagtctgtccatcatatttttgaactaaaaa-ttgatgatgtgatatgttttaaa 214  Q
    ||||||||  || ||||||||||||||||||||| |||| ||| ||||||||||||||    
T  10110027 ttttagtccttctatcatatttttgaactaaaaatttgacgatatgatatgttttaaa 10109970  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 30466594 - 30466630
Alignment:
Q  178 ttttgaactaaaaattgatgatgtgatatgttttaaa 214  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  30466594 ttttgaactaaaaattgattatgtgatatgctttaaa 30466630  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 45312275 - 45312218
Alignment:
Q  29 ggttcgaacccggatgaaggtgtccaacctaacaatttcggcattgcaagttgagcta 86  Q
    |||||||||| || ||||||||||||||||||||||||||||||||  ||||||||||    
T  45312275 ggttcgaacctgggtgaaggtgtccaacctaacaatttcggcattgtcagttgagcta 45312218  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 25079785 - 25079884
Alignment:
Q  125 tagatttggtcgctctatttcaaaatccgacaattttagtctgtccatcatatttttgaactaaaaattgatgatgtgatatgttttaaatgatgtggta 224  Q
    |||||||| || |||||||| ||||||  | | |||| |||  | ||| |||||||| ||| |||||||||||||||||||  ||||||||||| |||||    
T  25079785 tagatttgatctctctattttaaaatctcatagttttggtcctttcattatattttttaacaaaaaattgatgatgtgataacttttaaatgatatggta 25079884  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 36742051 - 36742101
Alignment:
Q  170 catcatatttttgaactaaaaattgatgatgtgatatgttttaaatgatgt 220  Q
    |||||||||||| ||||||||||||||||| |||||| ||  |||||||||    
T  36742051 catcatatttttaaactaaaaattgatgatttgatattttgcaaatgatgt 36742101  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 37327348 - 37327425
Alignment:
Q  139 ctatttcaaaatccgacaattttagtctgtccatcatatttttgaactaaaaattgatgatgtgatatgttttaaatg 216  Q
    |||||| ||||| |||||||||| |||| || |||||||||||||| || ||||   ||||||||||  |||||||||    
T  37327348 ctattttaaaattcgacaattttggtctctctatcatatttttgaattataaatatgtgatgtgataaattttaaatg 37327425  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 27879466 - 27879513
Alignment:
Q  169 ccatcatatttttgaactaaaaattgatgatgtgatatgttttaaatg 216  Q
    |||| |||||||||||||||||| | ||||||||||||||||||||||    
T  27879466 ccataatatttttgaactaaaaactaatgatgtgatatgttttaaatg 27879513  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 43926447 - 43926495
Alignment:
Q  29 ggttcgaacccggatgaaggtgtccaacctaacaatttcggcattgcaa 77  Q
    ||||||||| ||| |||||||||||||||||||||| || |||||||||    
T  43926447 ggttcgaacacgggtgaaggtgtccaacctaacaatgtcagcattgcaa 43926495  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 45090292 - 45090245
Alignment:
Q  171 atcatatttttgaactaaaaattgatgatgtgatatgttttaaatgat 218  Q
    |||||||||||||| |||||  | ||||||||||||||||||||||||    
T  45090292 atcatatttttgaattaaaatataatgatgtgatatgttttaaatgat 45090245  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 46562133 - 46562043
Alignment:
Q  122 ttgtagatttggtcgctctatttcaaaatccgacaattttagtctgtccatcatatttttgaactaaaaattgatgatgtgatatgttttaa 213  Q
    |||||| ||||||| | |||||||||||||  ||| |||  |||  | ||||||||||||||| ||||| |||||||| |||||||||||||    
T  46562133 ttgtagttttggtccccctatttcaaaatcttacagtttcggtccctacatcatatttttgaattaaaa-ttgatgatttgatatgttttaa 46562043  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 225
Target Start/End: Original strand, 28081128 - 28081214
Alignment:
Q  140 tatttcaaaatccgacaattttagtctgtccatcatatttttgaactaaaa-attgatgatgtgatatgttttaaatgatgtggtat 225  Q
    ||||| |||||||||||| ||||||   | |||||||||| | |||||||| ||||||||||  |||||||||| ||||||| ||||    
T  28081128 tattttaaaatccgacaactttagttctttcatcatatttctaaactaaaaaattgatgatgaaatatgttttagatgatgttgtat 28081214  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 25291435 - 25291491
Alignment:
Q  153 gacaattttagtctgtccatcatatttttgaactaaaaattgatgatgtgatatgtt 209  Q
    |||||||||||||   | ||| |||||||||| |||||||||||||||| |||||||    
T  25291435 gacaattttagtcccactatcttatttttgaattaaaaattgatgatgtaatatgtt 25291491  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 44200671 - 44200721
Alignment:
Q  31 ttcgaacccggatgaaggtgtccaacctaacaatttcggcattgcaagttg 81  Q
    ||||||||||| ||||||||||||||||| | ||||||||||||| |||||    
T  44200671 ttcgaacccgggtgaaggtgtccaacctagcgatttcggcattgcgagttg 44200721  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 54223506 - 54223458
Alignment:
Q  27 caggttcgaacccggatgaaggtgtccaacctaacaatttcggcattgc 75  Q
    |||||||||||||||||||| ||||||| |||| |||| ||||||||||    
T  54223506 caggttcgaacccggatgaatgtgtccagcctagcaatatcggcattgc 54223458  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 54325090 - 54325154
Alignment:
Q  29 ggttcgaacccggatgaaggtgtccaacctaacaatttcggcattgcaagttgagctagacttta 93  Q
    |||| ||||| || |||||||||||||||||  |||||||||||||| ||||| ||||| |||||    
T  54325090 ggttagaacctgggtgaaggtgtccaacctagtaatttcggcattgctagttgcgctaggcttta 54325154  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 49519196 - 49519230
Alignment:
Q  187 aaaaattgatgatgtgatatgttttaaatgatgtg 221  Q
    |||||||| ||||||||||||||||||||||||||    
T  49519196 aaaaattggtgatgtgatatgttttaaatgatgtg 49519230  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 38745824 - 38745881
Alignment:
Q  168 tccatcatatttttgaactaaaaattgatgatgtgatatgttttaaatgatgtggtat 225  Q
    |||||||||||| | |||| |||||| ||||| | ||||||||| |||||||||||||    
T  38745824 tccatcatatttctaaactgaaaatttatgatttaatatgtttttaatgatgtggtat 38745881  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 7107926 - 7107869
Alignment:
Q  168 tccatcatatttttgaactaaaaattgatgatgtgatatgttttaaatgatgtggtat 225  Q
    |||||||  |||||||| |||||||| |||||||||||||| ||||||| ||||||||    
T  7107926 tccatcacttttttgaagtaaaaattaatgatgtgatatgtgttaaatggtgtggtat 7107869  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 8786704 - 8786761
Alignment:
Q  168 tccatcatatttttgaactaaaaattgatgatgtgatatgttttaaatgatgtggtat 225  Q
    |||||||  |||||||| |||||||| |||||||||||||| ||||||| ||||||||    
T  8786704 tccatcacttttttgaagtaaaaattaatgatgtgatatgtgttaaatggtgtggtat 8786761  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 28587656 - 28587743
Alignment:
Q  128 atttggtcgctctatttcaaaatccgacaattttagtctgtccatcatatttttgaactaaaaattgatgatgtgatatgttttaaatg 216  Q
    |||||||| | |||||| ||||| ||||| |||| |||  |||||||||||||| |||||||||  | |||||||||| ||||||||||    
T  28587656 atttggtccccctattttaaaattcgacagttttcgtccctccatcatattttt-aactaaaaagaggtgatgtgataggttttaaatg 28587743  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 27356585 - 27356521
Alignment:
Q  30 gttcgaacccggatgaaggtgtccaacctaacaatttcggcattgcaagttgagctagactttac 94  Q
    |||||||||| | | |||| |||||||||||||||||||||||||| | || |||||| ||||||    
T  27356585 gttcgaacccaggtaaaggcgtccaacctaacaatttcggcattgccaattaagctaggctttac 27356521  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 14954113 - 14954159
Alignment:
Q  173 catatttttgaactaaaaa-ttgatgatgtgatatgttttaaatgat 218  Q
    ||||||||||||||||||| |||  ||||||||||||||||||||||    
T  14954113 catatttttgaactaaaaaattggagatgtgatatgttttaaatgat 14954159  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 36632685 - 36632735
Alignment:
Q  137 ctctatttcaaaatccgacaattttagtctgtccatcatatttttgaacta 187  Q
    |||||||| ||||| ||||||||||| ||  ||||||||||||||||||||    
T  36632685 ctctattttaaaattcgacaattttactccctccatcatatttttgaacta 36632735  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 24760667 - 24760724
Alignment:
Q  38 ccggatgaaggtgtccaacctaacaa-tttcggcattgcaagttgagctagactttac 94  Q
    |||| |||||| |||||||||||||| ||| |||||||| ||||||||||| ||||||    
T  24760667 ccggctgaaggcgtccaacctaacaaattttggcattgccagttgagctaggctttac 24760724  T

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