View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10782_low_1 (Length: 528)
Name: NF10782_low_1
Description: NF10782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10782_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 282 - 510
Target Start/End: Original strand, 46020524 - 46020746
Alignment:
| Q |
282 |
ggtgttggatctctttttgttgttcttctgtattcccatgttttattctcttagtactagtagaagaaggaacatgaagatccttgtcataactactagt |
381 |
Q |
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| T |
46020524 |
ggtgttggatctctttttgttgttcttctgtattcccatgttttattctcttagtactagtagaag---gaacatgaagatccttgtcataactactagt |
46020620 |
T |
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| Q |
382 |
actacccacatgagatgccctcttcgatgatgccattcaattttttgttgttgttgaaaagcccaaaaagtttatttatttatttatttataaacaaaac |
481 |
Q |
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| T |
46020621 |
actacccacatgagatgccctcttcgatg---ccattcaattttttgttgttgttgaaaagcccaaaaagttaatttatttatttatttattaacaaaac |
46020717 |
T |
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| Q |
482 |
aaccaaacacaagaagcactaagattctt |
510 |
Q |
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| T |
46020718 |
aaccaaacacaagaagcactaagattctt |
46020746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 22 - 244
Target Start/End: Original strand, 46020266 - 46020491
Alignment:
| Q |
22 |
agttaatagcatcaaagattggtatgcattattagaatccatgaagcaagagtatgaattattagttaatttaccactcttcgaagtaaaggttcaaagt |
121 |
Q |
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| T |
46020266 |
agttaatagcatcaaagattggtatccattattagaatccatgaagcaagagtatgagtgattagttaatttaccacttttcgaagtaaaggttcaaagt |
46020365 |
T |
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| Q |
122 |
aaaacgcaaaggtgttacgggcggcgccagtagtgctgcacaaat---agaaggagaagaagtcaagtcaactaactaagaaaggaaagtttagaggtac |
218 |
Q |
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| T |
46020366 |
aaaacgcaaaggtgttacgggcggcgctagtagtgctgcacaaatagaagaagaagaagaagtcaagtcaactaactaagaaaggaaagtttagaggtac |
46020465 |
T |
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| Q |
219 |
atgcagaatattgaattgtattgcat |
244 |
Q |
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| T |
46020466 |
atgcagaatattgaattgtattgcat |
46020491 |
T |
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