View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10782_low_10 (Length: 251)
Name: NF10782_low_10
Description: NF10782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10782_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 16499515 - 16499285
Alignment:
| Q |
1 |
atgttagcaagatctatcacagcaatagtataatttgatgcgtccctcgactccctcgactctgatgccttcttgattttatcaggtagatgataaaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16499515 |
atgttagcaagatctatcacagcaatagtataatttgatgcgtccctcgactccctcgactctgatgccttcttgattttatcaggtagatgataaaata |
16499416 |
T |
|
| Q |
101 |
tatgagggattttggtaatccctgcatcaacaagtcctttaacaccaagttttgtttcatcaaaagtttttagttcttttactctttctgaatctgccat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
16499415 |
tatgagggattttggtaatccctgcatcaacaagtcctttaacaccaagttttgtatcatcaaaagctttgagttcttttactctttctgaatctgccat |
16499316 |
T |
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| Q |
201 |
gcctttctcttacttttcccttgtagtacta |
231 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |
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| T |
16499315 |
gcctttctcttacttttcacttgtagtacta |
16499285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 58 - 200
Target Start/End: Original strand, 16443038 - 16443180
Alignment:
| Q |
58 |
gactctgatgccttcttgattttatcaggtagatgataaaatatatgagggattttggtaatccctgcatcaacaagtcctttaacaccaagttttgttt |
157 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16443038 |
gactctgatgccttcttgattttatcaggtagatgataaaatatatgagggattttggtaatccctgcatcaacaagtcctttaacaccaagttttgttt |
16443137 |
T |
|
| Q |
158 |
catcaaaagtttttagttcttttactctttctgaatctgccat |
200 |
Q |
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|||||||| |||||||||||||| ||||||| ||||| |||| |
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| T |
16443138 |
catcaaaatcttttagttcttttattctttctaaatcttccat |
16443180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 58 - 202
Target Start/End: Original strand, 16427444 - 16427588
Alignment:
| Q |
58 |
gactctgatgccttcttgattttatcaggtagatgataaaatatatgagggattttggtaatccctgcatcaacaagtcctttaacaccaagttttgttt |
157 |
Q |
| |
|
|||||||||||||||||| | |||||||| | ||||| || ||| |||||| || |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
16427444 |
gactctgatgccttcttggtgctatcaggtggttgatagaaaatacgagggacctttgtaatccctgcatcaacaagtcctctaacaccaagttttgttt |
16427543 |
T |
|
| Q |
158 |
catcaaaagtttttagttcttttactctttctgaatctgccatgc |
202 |
Q |
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||||||||| |||||||||||||||||||||| ||||| |||||| |
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| T |
16427544 |
catcaaaagcttttagttcttttactctttctaaatcttccatgc |
16427588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 59 - 202
Target Start/End: Original strand, 16416526 - 16416669
Alignment:
| Q |
59 |
actctgatgccttcttgattttatcaggtagatgataaaatatatgagggattttggtaatccctgcatcaacaagtcctttaacaccaagttttgtttc |
158 |
Q |
| |
|
||||||||||||||||| | ||||| | | ||||| || ||| ||||||| || |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16416526 |
actctgatgccttcttggtgctatcacggggttgatagaaaatacgagggatctttgtaatccctgcatcgacaagtcctttaacaccaagttttgtttc |
16416625 |
T |
|
| Q |
159 |
atcaaaagtttttagttcttttactctttctgaatctgccatgc |
202 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||| |||||| |
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| T |
16416626 |
atcaaaagcttttagttcttttactctttctaaatcttccatgc |
16416669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 81 - 210
Target Start/End: Original strand, 16419727 - 16419856
Alignment:
| Q |
81 |
atcaggtagatgataaaatatatgagggattttggtaatccctgcatcaacaagtcctttaacaccaagttttgtttcatcaaaagtttttagttctttt |
180 |
Q |
| |
|
||||||| ||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| ||| ||| |
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| T |
16419727 |
atcaggtggatgatagaacatatgagggatcttggtaatccctgcatcaacaagtccttttacaccaaattttgtttcatcaaaagctttcagtattttc |
16419826 |
T |
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| Q |
181 |
actctttctgaatctgccatgcctttctct |
210 |
Q |
| |
|
||||| ||||||||| |||| |||||||| |
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|
| T |
16419827 |
actctctctgaatcttccatagctttctct |
16419856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 81 - 193
Target Start/End: Complemental strand, 16438300 - 16438188
Alignment:
| Q |
81 |
atcaggtagatgataaaatatatgagggattttggtaatccctgcatcaacaagtcctttaacaccaagttttgtttcatcaaaagtttttagttctttt |
180 |
Q |
| |
|
||||||| ||||||| || ||| ||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||| |||| |
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| T |
16438300 |
atcaggtggatgatagaacatacgagggatcttggtaatccctgcatcaacaagtcctttaacacccaattttgtttcatcaaaagcttttagtgttttt |
16438201 |
T |
|
| Q |
181 |
actctttctgaat |
193 |
Q |
| |
|
| ||||||||||| |
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| T |
16438200 |
attctttctgaat |
16438188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 16432865 - 16432940
Alignment:
| Q |
130 |
acaagtcctttaacaccaagttttgtttcatcaaaagtttttagttcttttactc-tttctgaatctgccatgcct |
204 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||||| ||||| |||||||| |
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| T |
16432865 |
acaagtcctttaacaccaagttttttttcatcaaaagctttaagttcttttactcttttctaaatcttccatgcct |
16432940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 164
Target Start/End: Complemental strand, 2032671 - 2032628
Alignment:
| Q |
121 |
cctgcatcaacaagtcctttaacaccaagttttgtttcatcaaa |
164 |
Q |
| |
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|||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
2032671 |
cctgcatcaacaagtccttttacaccagcttttgtttcatcaaa |
2032628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 164
Target Start/End: Complemental strand, 2053918 - 2053875
Alignment:
| Q |
121 |
cctgcatcaacaagtcctttaacaccaagttttgtttcatcaaa |
164 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
2053918 |
cctgcatcaacaagtccttttacaccagcttttgtttcatcaaa |
2053875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 2021979 - 2021939
Alignment:
| Q |
124 |
gcatcaacaagtcctttaacaccaagttttgtttcatcaaa |
164 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||| |
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|
| T |
2021979 |
gcatcaacaagtcctttgacaccatcttttgtttcatcaaa |
2021939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 28713667 - 28713753
Alignment:
| Q |
78 |
tttatcaggtagatgataaaatatatgagggattttggtaatccctgcatcaacaagtcctttaacaccaagttttgtttcatcaaa |
164 |
Q |
| |
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|||||||||| |||||| ||||| |||||||||| ||| ||| ||||||||| |||||||||||| ||||||||||||||| |
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| T |
28713667 |
tttatcaggtggatgatgaaataaggtagggattttgagaataccttgatcaacaaggcctttaacaccagcttttgtttcatcaaa |
28713753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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