View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10782_low_11 (Length: 251)
Name: NF10782_low_11
Description: NF10782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10782_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 49019747 - 49019984
Alignment:
| Q |
1 |
tttcatccaacttattcattaccctctacaccccaaatggctgtatctggctttgaaggatttgagaaacggttggaacttcatttctttggagatgatc |
100 |
Q |
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| T |
49019747 |
tttcatccaacttattcattaccctctacaccccaaatggctgtatctggctttgaaggatttgagaaacggttggaacttcatttctttggagatgatc |
49019846 |
T |
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| Q |
101 |
caattaccttccaactaggtctaagaaaaattgattttgaatcaatacaacaagtgttagaagctgttcaatgcacagtggtttcagcagttggtaactc |
200 |
Q |
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| T |
49019847 |
caattaccttccaactaggtctaagaaaaattgattttgaatcaatacaacaagttttagaagctgttcaatgcacagtggtttcagcagttggtaactc |
49019946 |
T |
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| Q |
201 |
ttactttgatgcatacgttttatcagaatcaagcctct |
238 |
Q |
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| T |
49019947 |
ttactttgatgcatacgttttatcagaatcaagcctct |
49019984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 46 - 238
Target Start/End: Complemental strand, 7082019 - 7081818
Alignment:
| Q |
46 |
tctggctttgaaggatttgagaaacggttggaacttcatttctttggagatgatccaatt---acctt------ccaactaggtctaagaaaaattgatt |
136 |
Q |
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| T |
7082019 |
tctggttttgaaggctttgaaaaaagattagaacttcatttctttggtgatgatccaaatccaaccattaatcaccaactaggcctaagaaaacttgagt |
7081920 |
T |
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| Q |
137 |
ttgaatcaatacaacaagtgttagaagctgttcaatgcacagtggtttcagcagttggtaactcttactttgatgcatacgttttatcagaatcaagcct |
236 |
Q |
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| T |
7081919 |
ttgaatccattcaacaaatcctacaagctgttcaatgcacagttgtttcagcagttggaaactcttactttgatgcctatgttttatcagaatcaagtct |
7081820 |
T |
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| Q |
237 |
ct |
238 |
Q |
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|| |
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| T |
7081819 |
ct |
7081818 |
T |
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