View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10782_low_12 (Length: 241)
Name: NF10782_low_12
Description: NF10782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10782_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 16499603 - 16499827
Alignment:
| Q |
1 |
tagcatcccagtgagtattttgaaggaaatgaaagatggagtggtgagattttttgagcaagatagtgaggtcaagaaggaattttatactcgtgagcaa |
100 |
Q |
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| T |
16499603 |
tagcatccaagtgagtattttgaaggaaatgaaagatggagtggtgagattttttgagcaagatagtgaggtcaagaaggaattttatactcgtgagcaa |
16499702 |
T |
|
| Q |
101 |
aaaccctttatgtataatagtaattttgctctatatacctcacaagcttcaactaattggaaagattcttttctctacaacatgtctcctaatcccccta |
200 |
Q |
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| T |
16499703 |
aaaccttttatgtataatagtaattttgctctatatacctcacaagcttcaactaattggaaagattctttcctctacaacatgtctcctaatcccccta |
16499802 |
T |
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| Q |
201 |
aaccagaagatctcccagttgtatg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
16499803 |
aaccagaagatctcccagttgtatg |
16499827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 16416393 - 16416174
Alignment:
| Q |
3 |
gcatcccagtgagtattttgaaggaaatgaaagatggagtggtgagattttttgagcaagatagtgaggtcaagaaggaattttatactcgtgagcaaaa |
102 |
Q |
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|||| |||||||||| |||| |||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||| ||||| || || |
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| T |
16416393 |
gcattccagtgagtactttggaggaaatgaaagatggggtgaaaagtttttttgagcaagatagtgaggtcaagaaggaattttatacacgtgaacataa |
16416294 |
T |
|
| Q |
103 |
accctttatgtataatagtaattttgctctatatacctcacaagcttcaactaattggaaagattcttttctctacaacatgtctcctaatccccctaaa |
202 |
Q |
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| T |
16416293 |
accttttatgcattatagtaatattgctctatataccgcaccagct---gctacttggaaagattctttcctttgcaacatggctcctattccccctaaa |
16416197 |
T |
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| Q |
203 |
ccagaagatctcccagttgtatg |
225 |
Q |
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| T |
16416196 |
ccagaagacctgccagttgtatg |
16416174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 16438452 - 16438656
Alignment:
| Q |
3 |
gcatcccagtgagtattttgaaggaaatgaaagatggagtggtgagattttttgagcaagatagtgaggtcaagaaggaattttatactcgtgagcaaaa |
102 |
Q |
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||||||||||||||| |||||| |||||||||||||| ||||| || ||||||||||||||||||||||| || ||||||||||| ||||| || |||| |
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| T |
16438452 |
gcatcccagtgagtactttgaatgaaatgaaagatggggtggtaagtttttttgagcaagatagtgaggtaaaaaaggaattttacactcgcgaacaaag |
16438551 |
T |
|
| Q |
103 |
accctttatgtataatagtaattttgctctatatacctcacaagcttcaactaattggaaagattcttttctctacaacatgtctcctaatccccctaaa |
202 |
Q |
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| T |
16438552 |
accctttatgtataatagtaactttaatctatacacctc---agctccaaccagttggaaagatactttcttatgcaacatggctcctaatccacctaaa |
16438648 |
T |
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| Q |
203 |
ccagaaga |
210 |
Q |
| |
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|||||||| |
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| T |
16438649 |
ccagaaga |
16438656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 125
Target Start/End: Complemental strand, 16427312 - 16427190
Alignment:
| Q |
3 |
gcatcccagtgagtattttgaaggaaatgaaagatggagtggtgagattttttgagcaagatagtgaggtcaagaaggaattttatactcgtgagcaaaa |
102 |
Q |
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||||||||||||||| ||||| |||||||||||||| ||||| || |||||||||||||||||||||||||| ||| ||| ||| |||||||| ||| |
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| T |
16427312 |
gcatcccagtgagtacgttgaatgaaatgaaagatggggtggtaagtttttttgagcaagatagtgaggtcaaaaagaaatattacactcgtgaaagaaa |
16427213 |
T |
|
| Q |
103 |
accctttatgtataatagtaatt |
125 |
Q |
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||||||| ||||||||||||||| |
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| T |
16427212 |
accctttgtgtataatagtaatt |
16427190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 125
Target Start/End: Complemental strand, 16442906 - 16442784
Alignment:
| Q |
3 |
gcatcccagtgagtattttgaaggaaatgaaagatggagtggtgagattttttgagcaagatagtgaggtcaagaaggaattttatactcgtgagcaaaa |
102 |
Q |
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||||||||||||||| ||||| |||||||||||||| ||||| || |||||||||||||||||||||||||| ||| ||| ||| |||||||| ||| |
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| T |
16442906 |
gcatcccagtgagtacgttgaatgaaatgaaagatggggtggtaaggttttttgagcaagatagtgaggtcaaaaagaaatattacactcgtgaaagaaa |
16442807 |
T |
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| Q |
103 |
accctttatgtataatagtaatt |
125 |
Q |
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||||||| ||||||||||||||| |
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| T |
16442806 |
accctttgtgtataatagtaatt |
16442784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 16417695 - 16417562
Alignment:
| Q |
3 |
gcatcccagtgagtattttgaaggaaatgaaagatggagtggtgagattttttgagcaagatagtgaggtcaagaaggaattttatactcgtgagcaaaa |
102 |
Q |
| |
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|||||||| |||||| |||| || |||| |||||||| || || || |||||||||||||||||||| || ||| ||||||| |||||||| || | |
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| T |
16417695 |
gcatcccactgagtactttggagaaaattaaagatggggtaaaaagtttctttgagcaagatagtgaggtaaaaaagaaattttacactcgtgaacatag |
16417596 |
T |
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| Q |
103 |
accctttatgtataatagtaattttgctctatat |
136 |
Q |
| |
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||| ||| ||||||||||||||||| ||||||| |
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| T |
16417595 |
accttttctgtataatagtaattttaatctatat |
16417562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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