View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10782_low_16 (Length: 206)
Name: NF10782_low_16
Description: NF10782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10782_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 31024253 - 31024424
Alignment:
| Q |
18 |
agacataaaaagaggattgatgttcaatttcctatcagacagcttgttctaaatatccaaaattgaacaagtttaaaggtctaaacaatgtcataatgtg |
117 |
Q |
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| T |
31024253 |
agacataaaaagaggattgatgttcaatttcctatcagacaacttgttctaaatatccaaaattgaacaagttcaaaggtctaaacaatgtcataatgtg |
31024352 |
T |
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| Q |
118 |
ctgaatataactacattcagtctaggttaccatatatcatcacacaactgaaaaaggatgacaacccttagt |
189 |
Q |
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| T |
31024353 |
ctgaatataactacattcagtctaggttatcatatatcatcacacaactgaaaaaggatgacaacccttagt |
31024424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 31071362 - 31071494
Alignment:
| Q |
18 |
agacataaaaagaggattgatgttcaatttcctatcagacagcttgttctaaatatccaaaattgaacaagtttaaaggtctaaacaatgtcataatgtg |
117 |
Q |
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| T |
31071362 |
agacatcaaaagaggattgatgttcaattttctatcagacaacttgttctaaatt--caaaattgaacaagttcaaaggtctaaacaatatcataatgtg |
31071459 |
T |
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| Q |
118 |
ctgaatataactacattcagtctaggttaccatat |
152 |
Q |
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| T |
31071460 |
gtgaatataactacagtcagtccaggttaccatat |
31071494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 31027862 - 31027966
Alignment:
| Q |
18 |
agacataaaaagaggattgatgttcaatttcctatcagacagcttgttctaaatatccaaaattgaacaagtttaaaggtctaaacaatgtcataatgtg |
117 |
Q |
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| T |
31027862 |
agacataaaaagaggattgatgttcaatttcctatcaaacaacttgttctatatatccaaaatcgaacaagttcaaaggtcaaaacaatgtcataatgtg |
31027961 |
T |
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| Q |
118 |
ctgaa |
122 |
Q |
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||||| |
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| T |
31027962 |
ctgaa |
31027966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 146 - 189
Target Start/End: Original strand, 31072332 - 31072375
Alignment:
| Q |
146 |
accatatatcatcacacaactgaaaaaggatgacaacccttagt |
189 |
Q |
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| T |
31072332 |
accatatatcatcacacaactgaaaaaggatgacaaaccttagt |
31072375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 31030278 - 31030315
Alignment:
| Q |
141 |
aggttaccatatatcatcacacaactgaaaaaggatga |
178 |
Q |
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| T |
31030278 |
aggttaccatatatcatcacacaagtgaaaaaggatga |
31030315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 21217281 - 21217209
Alignment:
| Q |
28 |
agaggattgatgttcaatttcctatcagacagcttgttctaaatatccaaaattgaacaagtttaaaggtctaaa |
102 |
Q |
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|||| |||||||||||||||||| ||| ||| ||| |||||| |||||||||| |||||||| |||| |||||| |
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| T |
21217281 |
agagcattgatgttcaatttcctctcaaacatcttattctaa--atccaaaatttaacaagttcaaagttctaaa |
21217209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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