View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10782_low_2 (Length: 442)
Name: NF10782_low_2
Description: NF10782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10782_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 6 - 425
Target Start/End: Complemental strand, 37520309 - 37519890
Alignment:
| Q |
6 |
agaagcaaaggtaatacaactacagcaacattaagagatgatgaatatatagggaaatccaagttagagacaccgcttgataatgatgaaacattcaaca |
105 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37520309 |
agaatcaaaggtaatacaactacagcaacattaagagatgatgaatatatagggaaatccaagttagagacaccgcttgataacgatgaaacattcaaca |
37520210 |
T |
|
| Q |
106 |
atttcattaaacgtgctacgtataaaatcagaaccgtcacaatgtccaagtccaacattgatagggagcagagtaacaacactgcacctgcagcaccaga |
205 |
Q |
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| T |
37520209 |
atttcattaaacgtgctacgtataaaatcagaaccgtcacaatgtccaagtccaacattgatagggagcagaataacaacactgcacctgcagcaccaga |
37520110 |
T |
|
| Q |
206 |
tcatgaagctaatggtaataacagttataaggaaaattaccaaagggaccagtttgatgatttcattcagattgctaagnnnnnnntgagagcttcatca |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37520109 |
tcatgaagctaatggtaataacagttataaggaaaattaccaaagggaccagtttgatgatttcattcagattgctaagaaaaaaatgagagcttcatca |
37520010 |
T |
|
| Q |
306 |
agcattcgaaacaacagtttcttgaagaagccatgataattggtgatcctcaaagattatatgagttagcaacgtttggtgttgacttggcgttgactat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37520009 |
agcattcgaaacaacagtttcttgaagaagccatgataattggtgatcctcaaagattatatgagttagcaacgtttggtgttgacttggcgttgactat |
37519910 |
T |
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| Q |
406 |
gttctatgcttttgatcttc |
425 |
Q |
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| T |
37519909 |
gttctatgcttttgatcttc |
37519890 |
T |
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