View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10782_low_3 (Length: 384)
Name: NF10782_low_3
Description: NF10782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10782_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 14 - 369
Target Start/End: Original strand, 51821602 - 51821957
Alignment:
| Q |
14 |
agaacaagggcacggacatcttttgacaagccactattctcagaacaacgcttgaaggaaccaatagcatcaagcgtgcataaacccgggtttccggtga |
113 |
Q |
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| T |
51821602 |
agaacaagggcacggacatcttttgacaagccactattctcagaacaacgcttgaaggaaccaatagcatcaagcgtgcataaacccgggtttccggtga |
51821701 |
T |
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| Q |
114 |
ggcttccattgtaagcttgaatagtcaaacctattggaatttcaccggataatcggttatgcgaaagatcaaagagactcaacttcaatgaacctaaact |
213 |
Q |
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| T |
51821702 |
ggcttccattgtaagcttgaatagtcaaacctattggaatttcaccggataatcggttatgcgaaagatcaaagagactcaacttcaatgaacctaaact |
51821801 |
T |
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| Q |
214 |
ctctggtattttaccggaaagttcattctctgagaaattcagagaatttaaagccggtaacaaacccaaggaagaaggaatatctttcgagagttcattt |
313 |
Q |
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| T |
51821802 |
ctctggtattttaccggaaagttcattctctgagaaattcagagaatttaaagccggtaacaaacccaaggacgaaggaatatctttcgagagttcattt |
51821901 |
T |
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| Q |
314 |
ctcgaaagatcaacgtcgttgagtgagttacaataacctaaagactccggaattac |
369 |
Q |
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| T |
51821902 |
ctcgaaagatcaacgtcgttgagtgagttacaataacctaaagactccggaattac |
51821957 |
T |
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