View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10782_low_4 (Length: 344)
Name: NF10782_low_4
Description: NF10782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10782_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 134 - 326
Target Start/End: Original strand, 33380137 - 33380329
Alignment:
| Q |
134 |
ttatacttgtacatgtagatgtcacgaccaggtaccaaacgacgtttacagagaaagcaagagcgtaagaaatcagggttgtgagtcatatcagctgaat |
233 |
Q |
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| T |
33380137 |
ttatacttgtacatgtagatgtcacgaccaggtaccaaacgacgtttacagagaaagcaagagcgtaagaaatcagggttgtgagtcatatcagctgaat |
33380236 |
T |
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| Q |
234 |
ttcttctaaggtttctaggtgataccatggacataaccctgctctgatctgaaccgttgattccaggagaagttggtggatatggaccgtacg |
326 |
Q |
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| T |
33380237 |
ttcttctaaggtttctaggtgataccatggacataaccctgctctgatctgaaccgttgattccaggagaagttggtggatatggaccgtacg |
33380329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 33380024 - 33380114
Alignment:
| Q |
13 |
gcagagacatttgatacgttagggcacaggtttgaacttgcgtctggtatcaaacttagtatgtataagtttcaaccaagacttttagatg |
103 |
Q |
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| T |
33380024 |
gcagagacatttgatacgttagggcacaggtttgaacttgcgtctggtatcaaacttagtatgtataagtttcaaccaagacttttagatg |
33380114 |
T |
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