View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10782_low_5 (Length: 303)

Name: NF10782_low_5
Description: NF10782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10782_low_5
NF10782_low_5
[»] chr2 (22 HSPs)
chr2 (14-300)||(10353866-10354152)
chr2 (50-300)||(10372639-10372891)
chr2 (110-290)||(10348620-10348802)
chr2 (48-224)||(9292683-9292859)
chr2 (119-268)||(10336637-10336783)
chr2 (49-222)||(9321747-9321920)
chr2 (62-236)||(8572708-8572881)
chr2 (109-257)||(7114830-7114978)
chr2 (62-243)||(9316791-9316975)
chr2 (112-222)||(9329418-9329528)
chr2 (112-267)||(9060270-9060428)
chr2 (108-273)||(9283343-9283508)
chr2 (112-211)||(9357935-9358034)
chr2 (117-224)||(12018132-12018239)
chr2 (85-184)||(14551112-14551210)
chr2 (103-224)||(9275333-9275454)
chr2 (117-234)||(12011801-12011918)
chr2 (122-234)||(12005373-12005485)
chr2 (113-196)||(11986771-11986854)
chr2 (117-227)||(7612720-7612830)
chr2 (143-192)||(9365445-9365494)
chr2 (163-219)||(8578748-8578804)
[»] chr4 (2 HSPs)
chr4 (33-300)||(26575619-26575883)
chr4 (103-185)||(561980-562062)
[»] scaffold0667 (1 HSPs)
scaffold0667 (62-222)||(5228-5388)
[»] chr3 (2 HSPs)
chr3 (49-243)||(37463278-37463472)
chr3 (148-227)||(39428733-39428812)
[»] chr8 (1 HSPs)
chr8 (80-268)||(41965896-41966084)
[»] chr1 (4 HSPs)
chr1 (62-250)||(29467017-29467205)
chr1 (85-207)||(29452586-29452708)
chr1 (62-185)||(29442616-29442739)
chr1 (85-243)||(29424006-29424164)
[»] chr5 (1 HSPs)
chr5 (117-227)||(36225574-36225684)


Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 14 - 300
Target Start/End: Original strand, 10353866 - 10354152
Alignment:
Q  14 aaaagtaacatcgatgtgtctggatcagagaaaccatcatcgatttcaatttggtagatatcgaatttgaatcgaagaattaaggattgattgggggaat 113  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10353866 aaaagtaacatcgatgtgtctggatcagagaaatcatcatcgattttaatttggtagatatcgaatttgaatcgaagaattaaggattgattgggggaat 10353965  T
Q  114 ttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcggga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10353966 ttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcggga 10354065  T
Q  214 aaggatttcggtgagaatttccggtggaagttcagccgccattgtagggaaggaatgaaggttctgctagggtttagggtttttcat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10354066 aaggatttcggtgagaatttccggtggaagttcagccgccattgtaaggaaggaatgaaggttctgctagggtttagggtttttcat 10354152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 50 - 300
Target Start/End: Original strand, 10372639 - 10372891
Alignment:
Q  50 tcatcgatttcaatttggtagatatcgaatttgaatcgaagaattaaggattgattgggggaatttctgaggtgaaggttgatgaatttgttggaatcga 149  Q
    ||||||||||  | |||||||| ||||||||||  | |||| ||||||||| ||||| ||||||||  ||||||||||||||||||||||| ||||||||    
T  10372639 tcatcgatttggagttggtagagatcgaatttgcgttgaaggattaaggatcgattgagggaattttggaggtgaaggttgatgaatttgtgggaatcga 10372738  T
Q  150 ttagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaaggatttcggtgagaatttccggtggaagttcagc 249  Q
    |||  ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| | || ||||| |||||| || || |||||||||||    
T  10372739 ttaatgatttaaatgattttgaagttgatcggaatcggagaagtgattttaccggtaagcgggagaagacttcggcgagaatatcaggcggaagttcagc 10372838  T
Q  250 cgccattgtagggaag--gaatgaaggttctgctagggtttagggtttttcat 300  Q
    |||||||| |  ||||  ||| |||||||||||||||| ||||||||||||||    
T  10372839 cgccattgcaaagaaggagaaggaaggttctgctagggcttagggtttttcat 10372891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 110 - 290
Target Start/End: Original strand, 10348620 - 10348802
Alignment:
Q  110 gaatttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagc 209  Q
    |||||| | |||||||||||||||||||||  ||||||||||| |||||||| ||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  10348620 gaattttttaggtgaaggttgatgaatttgagggaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagc 10348719  T
Q  210 gggaaaggatttcggtgagaatttccggtggaagttcagccgccattgtagggaa--ggaatgaaggttctgctagggtttag 290  Q
    |||| | |||||||| |||||| ||||| ||||||||||||||||||  | ||||   ||| |||||||||||||||||||||    
T  10348720 gggagaagatttcggcgagaatatccggcggaagttcagccgccattccaaggaatgagaaggaaggttctgctagggtttag 10348802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 48 - 224
Target Start/End: Original strand, 9292683 - 9292859
Alignment:
Q  48 catcatcgatttcaatttggtagatatcgaatttgaatcgaagaattaaggattgattgggggaatttctgaggtgaaggttgatgaatttgttggaatc 147  Q
    ||||||||||||  | |||||||| ||||||||||  |||||| ||||||||| | ||| |||||||| |||||||||||||  ||||  |||  |||||    
T  9292683 catcatcgatttggagttggtagagatcgaatttgtgtcgaaggattaaggatcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatc 9292782  T
Q  148 gattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaaggatttcgg 224  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||| |||| |||| |||||| | ||||||||    
T  9292783 gattagggatttaagtgattttgaaattgatcggaatctgagaagtgattttactggtacgcgggagaagatttcgg 9292859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 119 - 268
Target Start/End: Original strand, 10336637 - 10336783
Alignment:
Q  119 aggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaagga 218  Q
    ||||||||||||||||||||||  |||||||||| |||||||| ||||||||| ||||||||||||| |||||||||| |||||||||| ||||| | ||    
T  10336637 aggtgaaggttgatgaatttgtgagaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaaacgggagaaga 10336736  T
Q  219 tttcggtgagaatttccggtggaagttcagccgccattgtagggaaggaa 268  Q
    |||||| |||||||||||| |||||   | ||||||||||| ||||||||    
T  10336737 tttcggagagaatttccggcggaag---atccgccattgtaaggaaggaa 10336783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 49 - 222
Target Start/End: Original strand, 9321747 - 9321920
Alignment:
Q  49 atcatcgatttcaatttggtagatatcgaatttgaatcgaagaattaaggattgattgggggaatttctgaggtgaaggttgatgaatttgttggaatcg 148  Q
    |||||||||||  | |||||||| ||||||||||  | |||  ||||||||| || || |||||||| |||| |||||||||||||| | ||  ||||||    
T  9321747 atcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgagaatcg 9321846  T
Q  149 attagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaaggatttc 222  Q
    |||| |||||||| |||||| |||||||||||||||  |||||||||| |||||||||||||||| ||||||||    
T  9321847 attatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 9321920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 62 - 236
Target Start/End: Complemental strand, 8572881 - 8572708
Alignment:
Q  62 atttggtagatatcgaatttgaatcgaagaattaaggattgattgggggaatttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaa 161  Q
    ||||||||||||||| | |||  |||||  ||||||||  ||||| |||||||| |||||||||||||| |||| |||| |||||||||||  |||||||    
T  8572881 atttggtagatatcgtagttgcgtcgaatgattaaggaacgattgagggaatttttgaggtgaaggttggtgaagttgtgggaatcgattatagatttaa 8572782  T
Q  162 atgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaaggatttcggtgagaatttccg 236  Q
     ||||||||||||||||||||||| |||||||||| |||| |||| |||||| | |||||| ||||  |||||||    
T  8572781 gtgattttgaagttgatcggaatcggagaagtgat-ttactggtatgcgggagaagatttcagtgactatttccg 8572708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 109 - 257
Target Start/End: Complemental strand, 7114978 - 7114830
Alignment:
Q  109 ggaatttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaag 208  Q
    ||||||| | || ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||  |||||||||  ||| |||| |    
T  7114978 ggaatttttaagatgaaggttgatgaatttgtgggaatcgattaaggatttaagtgattttgaagttgatcggaatcgaagaagtgatcgtactggtagg 7114879  T
Q  209 cgggaaaggatttcggtgagaatttccggtggaagttcagccgccattg 257  Q
    || || | ||||||||  || |||||||| ||||| |||||||||||||    
T  7114878 cgagagaagatttcggatagtatttccggcggaagatcagccgccattg 7114830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 62 - 243
Target Start/End: Original strand, 9316791 - 9316975
Alignment:
Q  62 atttggtagatatcgaatttgaatcgaagaattaaggattgattgggggaatt---tctgaggtgaaggttgatgaatttgttggaatcgattagggatt 158  Q
    ||||||||||  ||| ||||| |  |||| ||||||||| ||||| |||||||   | ||||||||||||||||||| ||||  ||||| ||||  ||||    
T  9316791 atttggtagagttcggatttgtaatgaaggattaaggatcgattgagggaattatttttgaggtgaaggttgatgaagttgtgagaatctattaaagatt 9316890  T
Q  159 taaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaaggatttcggtgagaatttccggtggaag 243  Q
    ||| ||||||||||||||||||||||| |||||||||| |||| |||||| |||| | |||||||| ||| |||||||| |||||    
T  9316891 taagtgattttgaagttgatcggaatcggagaagtgattttactggtaagtgggagaagatttcggcgagtatttccggcggaag 9316975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 9329418 - 9329528
Alignment:
Q  112 atttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgg 211  Q
    |||| |||||||||||||  |||| |||| ||||||||||| |||||||| ||||||||||||||| ||||||| |||||||||| ||||||||||||||    
T  9329418 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 9329517  T
Q  212 gaaaggatttc 222  Q
    || ||||||||    
T  9329518 gagaggatttc 9329528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 112 - 267
Target Start/End: Complemental strand, 9060428 - 9060270
Alignment:
Q  112 atttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgg 211  Q
    |||| |||||| ||||||  |||| ||||  |||||||||| |||||||| ||||||||||||||||||||||| ||||||||||   ||||||||||||    
T  9060428 atttttgaggtaaaggttagtgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatcggaatcggagaagtgattgaaccggtaagcgg 9060329  T
Q  212 gaaaggatttcggtgagaatttccggtggaag---ttcagccgccattgtagggaagga 267  Q
    || | ||||||||  || |||||||| |||||    ||||||||||||| | |||||||    
T  9060328 gagaagatttcggcaagtatttccggcggaagaacatcagccgccattggaaggaagga 9060270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 108 - 273
Target Start/End: Complemental strand, 9283508 - 9283343
Alignment:
Q  108 gggaatttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaa 207  Q
    ||||| || ||||||||||||||||||||||||  ||||| |||||||||  || |||||| |||||||||||||||| ||| |||||| | || |||||    
T  9283508 gggaacttttgaggtgaaggttgatgaatttgtgagaatctattagggatcgaagtgatttagaagttgatcggaatcggagtagtgatttaactggtaa 9283409  T
Q  208 gcgggaaaggatttcggtgagaatttccggtggaagttcagccgccattgtagggaaggaatgaag 273  Q
    || ||| | ||||||||  || || ||||| ||||| || | |||||||| | |||||||| ||||    
T  9283408 gcaggagaagatttcggcaagtatgtccggcggaagatcggacgccattggaaggaaggaaggaag 9283343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 9357935 - 9358034
Alignment:
Q  112 atttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgg 211  Q
    |||| ||||||||||||| ||||| ||||  |||||||||| |||||||| |||||||||||||||||  || | |||||||||| |||| |||||||||    
T  9357935 atttttgaggtgaaggtttatgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcgg 9358034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 224
Target Start/End: Complemental strand, 12018239 - 12018132
Alignment:
Q  117 tgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaag 216  Q
    |||| ||||| ||| |||| ||||  |||||||||| |||||||| ||||||||||||||| |||||||  ||||||||| |||| ||||||||||| |     
T  12018239 tgagttgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcgaagaagtgattttactggtaagcgggagaa 12018140  T
Q  217 gatttcgg 224  Q
    ||||||||    
T  12018139 gatttcgg 12018132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 184
Target Start/End: Original strand, 14551112 - 14551210
Alignment:
Q  85 tcgaagaattaaggattgattgggggaatttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaat 184  Q
    |||||| ||||||||   |||| |||||||| | |||||||| |||||||| |||| ||||||||||||||||| || ||||||||||||||||||||||    
T  14551112 tcgaaggattaaggaacaattgagggaattttt-aggtgaagtttgatgaagttgtgggaatcgattagggattgaagtgattttgaagttgatcggaat 14551210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 9275333 - 9275454
Alignment:
Q  103 attgggggaatttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattacc 202  Q
    |||| |||||||| |||| |||||||||||||| |||| |||||| || |  ||||||| |||||||||  |||||||||||| ||||||||||  |||     
T  9275333 attgagggaatttttgagatgaaggttgatgaagttgtgggaatcaatcaacgatttaagtgattttgagattgatcggaatcagagaagtgattgtact 9275432  T
Q  203 ggtaagcgggaaaggatttcgg 224  Q
    ||||| ||||| | ||||||||    
T  9275433 ggtaaccgggagaagatttcgg 9275454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 117 - 234
Target Start/End: Complemental strand, 12011918 - 12011801
Alignment:
Q  117 tgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaag 216  Q
    |||||||||| ||| |||| ||||  |||||||||| |||||||| ||||||||||||||| ||||||| ||||||||||  |    |||||||||| |     
T  12011918 tgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcggagaagtgattgtggatgtaagcgggagaa 12011819  T
Q  217 gatttcggtgagaatttc 234  Q
    |||||||||||| |||||    
T  12011818 gatttcggtgagtatttc 12011801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 234
Target Start/End: Complemental strand, 12005485 - 12005373
Alignment:
Q  122 tgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaaggattt 221  Q
    ||||||||| |||| ||||  |||||||||| ||||||||  |||| ||||||||| ||||||| ||||||||||  |   ||||||||||| | |||||    
T  12005485 tgaaggttggtgaagttgtgagaatcgattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggaggtaagcgggagaagattt 12005386  T
Q  222 cggtgagaatttc 234  Q
    ||||||| |||||    
T  12005385 cggtgagtatttc 12005373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 11986854 - 11986771
Alignment:
Q  113 tttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgat 196  Q
    |||||||||||||| ||| |||| ||||  ||||| |||| ||||||||  |||| ||||||||| ||||||| ||||||||||    
T  11986854 tttctgaggtgaagattggtgaagttgtgagaatcaattatggatttaagcgattctgaagttgagcggaatcggagaagtgat 11986771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 7612720 - 7612830
Alignment:
Q  117 tgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaag 216  Q
    |||||||||||||  |||| |||| |||||| |||| ||||||||  ||||| ||| |||||||||||| ||| || | |  |||||||||||| || ||    
T  7612720 tgaggtgaaggtttgtgaagttgtgggaatcaattaaggatttaagcgatttagaaattgatcggaatcggaggagggtttgtaccggtaagcgagagag 7612819  T
Q  217 gatttcggtga 227  Q
    |||||| ||||    
T  7612820 gatttcagtga 7612830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 9365445 - 9365494
Alignment:
Q  143 gaatcgattagggatttaaatgattttgaagttgatcggaatctgagaag 192  Q
    |||||||||| |||||||| ||||||||| ||||||||||||| ||||||    
T  9365445 gaatcgattatggatttaagtgattttgaggttgatcggaatcggagaag 9365494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 8578804 - 8578748
Alignment:
Q  163 tgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaaggat 219  Q
    |||||| ||| |||||||||||| |||||| |||  ||||||||||||||| |||||    
T  8578804 tgatttagaaattgatcggaatcggagaagggattgtaccggtaagcgggagaggat 8578748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 33 - 300
Target Start/End: Original strand, 26575619 - 26575883
Alignment:
Q  33 ctggatcagagaaaccatcatcgatttcaatttggtagatatcgaatttgaatcgaagaattaaggattgattgggggaatttctgaggtgaaggttgat 132  Q
    |||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  26575619 ctggattagagaaatcatcattgatttcaagttggtagatatcgaatttgaatcgaaggattaaggatcgattgggggaatttctgaggtgaaggttgat 26575718  T
Q  133 gaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaaggatttcggtgagaatt 232  Q
    |||||||| ||||||||||| | |||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| | ||||||||||||||||    
T  26575719 gaatttgtaggaatcgattaagaatttaagtgattttgaagttgatcggaatcggagaagtgatattaccggtaaacgggagaagatttcggtgagaatt 26575818  T
Q  233 tccggtggaagttcagccgccattgtagggaaggaatgaaggttctgctagggtttagggtttttcat 300  Q
    ||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||||||||||||    
T  26575819 tccggtggaagttcagccgccattgtaaggaaggaatgaaggtt---ctagggtttagggtttttcat 26575883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 561980 - 562062
Alignment:
Q  103 attgggggaatttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatc 185  Q
    |||| |||| ||| |||||||||||||  |||| |||| ||||||||||| ||||||||   |||||||| || |||||||||    
T  561980 attgagggagtttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagccattttgaacttaatcggaatc 562062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 5228 - 5388
Alignment:
Q  62 atttggtagatatcgaatttgaatcgaagaattaaggattgattgggggaatttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaa 161  Q
    ||||||||||||| | || ||| |||||| || ||||||  |||| |||||||| || |||||||||||||||| ||||  |||||||||| ||||||||    
T  5228 atttggtagatattggatctgagtcgaaggatgaaggatctattgagggaatttttgcggtgaaggttgatgaagttgtgagaatcgattatggatttaa 5327  T
Q  162 atgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaaggatttc 222  Q
     ||||||||||||||||||||||| |||||||||| |||||||||||||||| | ||||||    
T  5328 gtgattttgaagttgatcggaatcggagaagtgattttaccggtaagcgggagaagatttc 5388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 49 - 243
Target Start/End: Original strand, 37463278 - 37463472
Alignment:
Q  49 atcatcgatttcaatttggtagatatcgaatttgaatcgaagaattaaggattgattgggggaatttctgaggtgaaggttgatgaatttgttggaatcg 148  Q
    |||||||||||  | ||||||||||||| | |||  |||||  |||| |||||||||| ||| |||| |||| |||||||||||||| ||||  ||||||    
T  37463278 atcatcgatttggagttggtagatatcggagttgtttcgaatgattacggattgattgaggggatttttgagatgaaggttgatgaagttgtgagaatcg 37463377  T
Q  149 attagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaaggatttcggtgagaatttccggtggaag 243  Q
    ||||  ||||||| ||||||||||||||||||||||| ||||||||||  ||| ||||| ||||| |||||||||| ||| |||||||| |||||    
T  37463378 attaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacgggagaggatttcggcgagtatttccggcggaag 37463472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 39428733 - 39428812
Alignment:
Q  148 gattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaaggatttcggtga 227  Q
    ||||| |||||||| | ||||||||||||||||||||  ||| || |||   |||||||||||||| |||||||||||||    
T  39428733 gattaaggatttaactcattttgaagttgatcggaattggaggagggattgcaccggtaagcgggagaggatttcggtga 39428812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 80 - 268
Target Start/End: Complemental strand, 41966084 - 41965896
Alignment:
Q  80 ttgaatcgaagaattaaggattgattgggggaatttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatc 179  Q
    |||| |||||| ||||||||| ||||| |||| ||||||||||||||||||||||| |||| ||||||||||| ||||  || |||||| || |||||||    
T  41966084 ttgagtcgaaggattaaggatcgattgagggattttctgaggtgaaggttgatgaagttgtgggaatcgattaaggatcgaagtgatttcgaggttgatc 41965985  T
Q  180 ggaatctgagaagtgatattaccggtaagcgggaaaggatttcggtgagaatttccggtggaagttcagccgccattgtagggaaggaa 268  Q
    |||||| ||||| |||| ||||||||||  |||| | |||||| | ||| ||||| || || || ||| ||| ||||||  ||||||||    
T  41965984 ggaatcggagaactgattttaccggtaatagggagaagatttcagcgagtatttctggcggtagatcaaccgtcattgtgaggaaggaa 41965896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 62 - 250
Target Start/End: Complemental strand, 29467205 - 29467017
Alignment:
Q  62 atttggtagatatcgaatttgaatcgaagaattaaggattgattgggggaatttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaa 161  Q
    |||||||||| |||| | |||  |||||| |||||| |  ||||| ||||||||| ||||||||| |||||||| |||| ||||||||||||||||| ||    
T  29467205 atttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttcggaggtgaagtttgatgaagttgtgggaatcgattagggattgaa 29467106  T
Q  162 atgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaaggatttcggtgagaatttccggtggaagttcagcc 250  Q
     ||||||||| ||||| ||||||| ||| || |||  |||||||||  | || | |||| ||||||  |||||||| ||||| ||||||    
T  29467105 gtgattttgaggttgaacggaatcggaggagggattgtaccggtaacagagagatgattccggtgattatttccggaggaagatcagcc 29467017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 85 - 207
Target Start/End: Complemental strand, 29452708 - 29452586
Alignment:
Q  85 tcgaagaattaaggattgattgggggaatttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaat 184  Q
    |||||| ||||||||  ||||| ||||||||  ||||||||| |||||||| ||||  |||||||||||||||| || ||||||||| ||||| ||||||    
T  29452708 tcgaaggattaaggaacgattgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaacggaat 29452609  T
Q  185 ctgagaagtgatattaccggtaa 207  Q
    | ||| || |||  |||||||||    
T  29452608 cggaggagggattgtaccggtaa 29452586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 185
Target Start/End: Complemental strand, 29442739 - 29442616
Alignment:
Q  62 atttggtagatatcgaatttgaatcgaagaattaaggattgattgggggaatttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaa 161  Q
    |||||||||| ||| || |||  |||||| ||||||||  ||||| || |||||  ||||||||| |||||||| || | ||||||||||||||||| ||    
T  29442739 atttggtagaaatcaaagttgtgtcgaaggattaaggaacgattgaggaaattttggaggtgaagtttgatgaagttatgggaatcgattagggattgaa 29442640  T
Q  162 atgattttgaagttgatcggaatc 185  Q
     |||||| || ||||| |||||||    
T  29442639 gtgatttcgacgttgaacggaatc 29442616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 243
Target Start/End: Original strand, 29424006 - 29424164
Alignment:
Q  85 tcgaagaattaaggattgattgggggaatttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaat 184  Q
    |||||| ||||||||  |||||  ||||||   ||||||||| ||||||||  ||| |||||||||||| |||| || ||||||||| ||||| ||||||    
T  29424006 tcgaaggattaaggaacgattgaaggaattatggaggtgaagcttgatgaagctgtgggaatcgattagagattgaagtgattttgaggttgaacggaat 29424105  T
Q  185 ctgagaagtgatattaccggtaagcgggaaaggatttcggtgagaatttccggtggaag 243  Q
    | ||| || |||  |||||||||  | || |||||| ||||||| || ||||| |||||    
T  29424106 cggaggagggattgtaccggtaacagagagaggattccggtgagtatctccggcggaag 29424164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 36225574 - 36225684
Alignment:
Q  117 tgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaag 216  Q
    |||||||||| ||  |||| ||||  ||||||||||  ||||||| ||||||||||||||||||||||| ||| || |||   ||  |||||||||| ||    
T  36225574 tgaggtgaagattagtgaagttgtgcgaatcgattaacgatttaagtgattttgaagttgatcggaatcggaggagggattgcactagtaagcgggagag 36225673  T
Q  217 gatttcggtga 227  Q
    |||||||||||    
T  36225674 gatttcggtga 36225684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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