View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10783_1 (Length: 636)
Name: NF10783_1
Description: NF10783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10783_1 |
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Alignment Details
Target: chr8 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 11 - 609
Target Start/End: Complemental strand, 39265212 - 39264614
Alignment:
| Q |
11 |
cataggctttatccaatgacagaattaccactgttaactcctctctgaacatttgtatctaagaataacataagaaatgaatctgtaaaccatgataaag |
110 |
Q |
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| T |
39265212 |
cataggctttatccaatgacagaattaccactgttaactcctctctgaacatttgtatctaagaataacataagaaatgaatctgtaaaccatgatgaag |
39265113 |
T |
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| Q |
111 |
caaacagtgacaccaacattcttccatctactaccttctcctccatacccttcttctttaagcacatcctctcccttcatcacacatgcaccaaacatat |
210 |
Q |
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| T |
39265112 |
caaacagtgacaccaacattcttccatctactaccttctcctccatacccttcttctttaagcacatcctctcccttcatcacacatgcaccaaacatat |
39265013 |
T |
|
| Q |
211 |
attccaaacacttctttgagttggagaactcattgatcagaaacccttcaaagggatacttaaaaagtgatatataatgcatgaaaatccagtaactagg |
310 |
Q |
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| T |
39265012 |
attccaaacacttctttgagttggagaactcattgatcagaaacccttcaaagggatacttaaaaagtgatatataatgcatgaaaatccagtaactagg |
39264913 |
T |
|
| Q |
311 |
aatctcatggtttgagatgaagtaaccagagaacaagaagaaagagcctataacgccattaatcactgaatttccaacaatgaaattaggcacaagagca |
410 |
Q |
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| T |
39264912 |
aatctcatggtttgagatgaagtaaccagagaacaagaagaaagagcctataacgccattaatcactgaatttccaacaatgaaattaggcacaagagca |
39264813 |
T |
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| Q |
411 |
ctgaaacaaaccacaacggaattggctgtataaagaacaagccatatcagtaacagaaagtgcaaaaaagcagtgaagtttgtgttgagaccaacaagcc |
510 |
Q |
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| T |
39264812 |
ctgaaacaaaccacaactgaattggctgtataaagaacaagccatatcagtaacagaaagtgcaaaaaagcagtgaagtttgtgttgagaccaacaagcc |
39264713 |
T |
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| Q |
511 |
agtataaaggaactgtgaacaaaatggctaggattagaagaaatggcaagtaaactaagccatttgcaatagcataagatgatacgcggtagcttccac |
609 |
Q |
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| T |
39264712 |
agtataaaggaactgtgaacaaaatggctaggattagaagaaatggcaagtaaactaagccatttgcaatagcataagatgatacgcggtagcttccac |
39264614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 64 - 610
Target Start/End: Complemental strand, 44068877 - 44068331
Alignment:
| Q |
64 |
tgtatctaagaataacataagaaatgaatctgtaaaccatgataaagcaaacagtgacaccaacattcttccatctactaccttctcctccatacccttc |
163 |
Q |
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| T |
44068877 |
tgtatctgagaattacataagaaatgaatctataaacaaagatgaagcacaccatcaccccaacattcttccatctactactctctcctccatacccttc |
44068778 |
T |
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| Q |
164 |
ttctttaagcacatcctctcccttcatcacacatgcaccaaacatatattccaaacacttctttgagttggagaactcattgatcagaaacccttcaaag |
263 |
Q |
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| T |
44068777 |
ttctttaagtacatcctctcctttcatcacacatgccccaaacatgtactctaagcacttctttgagttggagaactcatttattagaaacccttcaaat |
44068678 |
T |
|
| Q |
264 |
ggatacttaaaaagtgatatataatgcatgaaaatccagtaactaggaatctcatggtttgagatgaagtaaccagagaacaagaagaaagagcctataa |
363 |
Q |
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| T |
44068677 |
ggatacttaaatagggacaaatagtgcatgaaaatccagtagtttggaatttcatgattggatatgaagtaaccagagaacaagaaagaagaaccaatga |
44068578 |
T |
|
| Q |
364 |
cgccattaatcactgaatttccaacaatgaaattaggcacaagagcactgaaacaaaccacaacggaattggctgtataaagaacaagccatatcagtaa |
463 |
Q |
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| T |
44068577 |
caccggcgattatcgaatttccaacaatgaaattaggcaccagagcactgaaacagaccacaaccgagtttgcggtatacaaaaccagccatattagcaa |
44068478 |
T |
|
| Q |
464 |
cagaaagtgcaaaaaagcagtgaagtttgtgttgagaccaacaagccagtataaaggaactgtgaacaaaatggctaggattagaagaaatggcaagtaa |
563 |
Q |
| |
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|| |||||||||||| || ||||| ||| ||||||||| | || |||||| | || |||| ||| ||||||||||| || || ||||||||||||||| |
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| T |
44068477 |
caaaaagtgcaaaaacgctgtgaaattttggttgagaccgataatccagtaaagcggcactgcgaataaaatggctagtatgagtagaaatggcaagtaa |
44068378 |
T |
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| Q |
564 |
actaagccatttgcaatagcataagatgatacgcggtagcttccact |
610 |
Q |
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|||| |||||| ||||||||||||||||| || | |||||||||||| |
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| T |
44068377 |
actaggccattggcaatagcataagatgaaactctgtagcttccact |
44068331 |
T |
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