View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10783_11 (Length: 394)
Name: NF10783_11
Description: NF10783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10783_11 |
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| [»] scaffold1268 (1 HSPs) |
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| [»] scaffold1267 (1 HSPs) |
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| [»] scaffold0891 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 35869009 - 35868630
Alignment:
| Q |
1 |
catattccagttacttgcataattgctgatggtaattatgacttcgctggaagagtggctaaagatttgggcattcgagagatacaactttggacagctt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35869009 |
catattccagttacttgcataattgctgatggtaattatgactttgctggaagagtggctaaagatttgggcattcgagagatacaactttggacagctt |
35868910 |
T |
|
| Q |
101 |
ctacttgtggctttgtggcatatttgcaattcgaggagcttgtcaaaagaggaattcttccattcaaaggtaaatttaaccgatctttttctctatgttt |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35868909 |
ctacttgtgggtttgtggcatatttgcaattcgaggagcttgtcaaaagaggaattcttccattcaaaggtaaatttaaccgatctttttctctatgttt |
35868810 |
T |
|
| Q |
201 |
ctttaacaagtcatcgtgattttgtaaaagttaaatttgtaacttcaattaactcgtcatgaaattaatatatacttccctgatgactat--tatatnnn |
298 |
Q |
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| |||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||| ||||||||| ||||||||||||| | |||||| ||||| |
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| T |
35868809 |
c-ttaataagtcatcgtggttttgtaaaagctaaatttataacttcaattaactcgtgatgaaattagtatatacttccctaaagactattatatataaa |
35868711 |
T |
|
| Q |
299 |
nnnnnnnnnntcaatttttaaatacattaaataactgatgtatataatcgtgtgtgtaagaagtattctgcagatttgtac |
379 |
Q |
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||||||||| || ||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| |
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| T |
35868710 |
taaaaaaaaaacaatttttagatgcattaaataactgatttatataatagtgtttgtaagaagtattctgcagatttgtac |
35868630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 35854400 - 35854229
Alignment:
| Q |
1 |
catattccagttacttgcataattgctgatggtaattatgac-ttcgctggaagagtggctaaagatttgggcattcgagagatacaactttggacagct |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | | ||| || ||||||||||||||||| ||||| |||||| |||| |||| ||||||| ||| |
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| T |
35854400 |
catattccagttacttgcataattgctgatggca-taatgggatttgctggaagagtggctaaggatttaggcattaaagagctacagttttggactgct |
35854302 |
T |
|
| Q |
100 |
tctacttgtggctttgtggcatatttgcaattcgaggagcttgtcaaaagaggaattcttccattcaaaggta |
172 |
Q |
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||| ||||||||||||| | ||||||||||| || |||||||| |||||||||||||||||||||||||||| |
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| T |
35854301 |
tctgcttgtggctttgtcggatatttgcaatatgatgagcttgttaaaagaggaattcttccattcaaaggta |
35854229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 35759660 - 35759489
Alignment:
| Q |
1 |
catattccagttacttgcataattgctgatggtaattatgacttcgctggaagagtggctaaagatttgggcattcgagagatacaactttggacagctt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || || || ||||||||||| || | |||||||||||||| ||| ||||| ||||||| |||| |
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| T |
35759660 |
catattccagttacttgcattattgctgatggtctttttggttttgctggaagagtagcaagagatttgggcattcaagaaatacagttttggactgctt |
35759561 |
T |
|
| Q |
101 |
ctacttgtggctttgtggcatatttgcaattcgaggagcttgtcaaaagaggaattcttccattcaaaggta |
172 |
Q |
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|| ||||||| ||||||| ||||||||| | || || |||||||||||||| |||||||||||| |||||| |
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| T |
35759560 |
ctgcttgtgggtttgtgggatatttgcattatgatgaacttgtcaaaagaggcattcttccattccaaggta |
35759489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 35776085 - 35775913
Alignment:
| Q |
1 |
catattccagttacttgcataattgctgatggtaattatgacttcgctggaagagtggctaaagatttgggcattcgagagatacaactttggacagctt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| || | ||| ||||||| |||||| || |||||||| |||| ||| || ||||||| |||| |
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| T |
35776085 |
catattccagttacttgcataattgctgatggattttcgggctttgctggaaaagtggcaaaggatttggggattcaagaactagtgttttggactgctt |
35775986 |
T |
|
| Q |
101 |
ctacttgtggctttgtggcatatttgcaattcgaggagcttgtcaaaagaggaattcttccattcaaaggtaa |
173 |
Q |
| |
|
|| |||||||| | ||| |||||| || | ||| |||||||| | || |||||| |||| ||||||||||| |
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| T |
35775985 |
ctgcttgtggcatgttgggatatttacagtacgatgagcttgttgagaggggaattattcccttcaaaggtaa |
35775913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 35737772 - 35737686
Alignment:
| Q |
64 |
gatttgggcattcgagagatacaactttggacagcttctacttgtggctttgtggcatatttgcaattcgaggagcttgtcaaaaga |
150 |
Q |
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|
|||||||||||| |||| |||| ||||||| |||||| ||||||| || ||| |||||||||||| || |||||| |||||||| |
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| T |
35737772 |
gatttgggcattgcagagcaacaattttggactgcttctgcttgtgggttgatgggatatttgcaatttgatgagcttatcaaaaga |
35737686 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1268 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold1268
Description:
Target: scaffold1268; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 181 - 472
Alignment:
| Q |
1 |
catattccagttacttgcataattgctgatggtaattatgacttcgctggaagagtggctaaagatttgggcattcgagagatacaactttggacagctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
181 |
catattccagttacttgcataattgctgatggtaattatgactttgctggaagagtggctaaagatttgggcattcgagagatacaactttggacagctt |
280 |
T |
|
| Q |
101 |
ctacttgtggctttgtggcatatttgcaattcgaggagcttgtcaaaagaggaattcttccattcaaaggtaaatttaaccgatctttttctctatgttt |
200 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
281 |
ctacttgtgggtttgtggcatatttgcaattcgaggagcttgtcaaaagaggaattcttccattcaaaggtaaatttaaccgatctttttctctatgttt |
380 |
T |
|
| Q |
201 |
ctttaacaagtcatcgtgattttgtaaaagttaaatttgtaacttcaattaactcgtcatgaaattaatatatacttccctgatgactattatat |
295 |
Q |
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| |||| | ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| |||||| ||||||||||| |
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| T |
381 |
c-ttaatatgtcatcgtggttttgtaaaagctaaatttgtaacttcaattaactcgtgatgaaatttgtatatac--ccctgaagactattatat |
472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1267 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold1267
Description:
Target: scaffold1267; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 181 - 472
Alignment:
| Q |
1 |
catattccagttacttgcataattgctgatggtaattatgacttcgctggaagagtggctaaagatttgggcattcgagagatacaactttggacagctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
181 |
catattccagttacttgcataattgctgatggtaattatgactttgctggaagagtggctaaagatttgggcattcgagagatacaactttggacagctt |
280 |
T |
|
| Q |
101 |
ctacttgtggctttgtggcatatttgcaattcgaggagcttgtcaaaagaggaattcttccattcaaaggtaaatttaaccgatctttttctctatgttt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
281 |
ctacttgtgggtttgtggcatatttgcaattcgaggagcttgtcaaaagaggaattcttccattcaaaggtaaatttaaccgatctttttctctatgttt |
380 |
T |
|
| Q |
201 |
ctttaacaagtcatcgtgattttgtaaaagttaaatttgtaacttcaattaactcgtcatgaaattaatatatacttccctgatgactattatat |
295 |
Q |
| |
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| |||| | ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| |||||| ||||||||||| |
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|
| T |
381 |
c-ttaatatgtcatcgtggttttgtaaaagctaaatttgtaacttcaattaactcgtgatgaaatttgtatatac--ccctgaagactattatat |
472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 215 - 383
Alignment:
| Q |
5 |
ttccagttacttgcataattgctgatggtaattatga-cttcgctggaagagtggctaaagatttgggcattcgagagatacaactttggacagcttcta |
103 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| || ||| ||||||||||| || ||||||||||| |||| |||| || ||||||| ||||| |
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| T |
215 |
ttccagttacttgcataattgccgatgg-aatttcgagctttgctggaagagtagcaaaagatttggggattcaagagctagtgttttggactgcttcgg |
313 |
T |
|
| Q |
104 |
cttgtggctttgtggcatatttgcaattcgaggagcttgtcaaaagaggaattcttccattcaaaggtaa |
173 |
Q |
| |
|
||| |||||| ||| |||||| |||| ||| |||||||| || || |||||| |||| ||||||||||| |
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|
| T |
314 |
cttctggcttgttgggatatttacaatacgatgagcttgttaacaggggaattattcccttcaaaggtaa |
383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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