View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10783_12 (Length: 388)
Name: NF10783_12
Description: NF10783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10783_12 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 36691666 - 36692042
Alignment:
| Q |
1 |
gtattgtcccaaaatctttatttctgattcgaatcttttgatacacaattgagaatcatgtagtctcttagctacgaaaatgcaaccgttggaaagtgtt |
100 |
Q |
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| T |
36691666 |
gtattgtcccaaaatctttatttctgattcgaatcttttgatacacaattgagaatcatgtagtctcttagctgcgaaaatgcaaccgttggaaagtgtt |
36691765 |
T |
|
| Q |
101 |
gttttgtacattatcccagtcactcccaccccaatgacattgtccttactaaagtattgcgttgcatgatagaattttgtgaagttcatcttataagcca |
200 |
Q |
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| T |
36691766 |
gttttgtacattatcccagtcactcccaccccaatgacattgtccttactaaagtattgcgttgcatgatagaattttgtgaagttcatcttataagcca |
36691865 |
T |
|
| Q |
201 |
accgtccaactttattgatctgttgatttcatccataccnnnnnnncataacagacaacaatattatgttattttatgagtatagatatccataaaaaca |
300 |
Q |
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| T |
36691866 |
accgtccaactttattgatctgttgatttcatccataccaaaaaaacataacagacaacaatattatgttattttatgagtatagatatccataaaaaca |
36691965 |
T |
|
| Q |
301 |
tttgcatttgatcactgagattaatggattacctgtattcttttatctatcaactgcacaggtaacattttgttcat |
377 |
Q |
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| T |
36691966 |
tttgcatttgatcagtgagattaatggattacctgtattcttttatctatcaactgcacaggtaacattttgttcat |
36692042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 23655347 - 23655582
Alignment:
| Q |
1 |
gtattgtcccaaaatctttatttctgattcgaatcttttgatacacaattgagaatcatgtagtctcttagctacgaaaatgcaaccgttggaaagtgtt |
100 |
Q |
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|||||||||||||||| |||||||| | || || ||||||||| |||||||||||| |||||||||| | | || | | |||||| | ||| | | |
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| T |
23655347 |
gtattgtcccaaaatcattatttctaactcaaaccttttgataattgattgagaatcatatagtctcttaaccgccaagaaacgaccgttcggaagagct |
23655446 |
T |
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| Q |
101 |
gttttgtacattatcccagtcactcccaccccaatgacattgtccttactaaagtattgcgttgcatgatagaattttgtgaagttcatcttataagcca |
200 |
Q |
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| ||||||||||| || | ||||| || ||||||||||||||| ||||| |||| ||||||||| | | ||||||||||||||| |||||| || |
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| T |
23655447 |
gccttgtacattattccgattactccaacaccaatgacattgtccaagctaaaatatttggttgcatgacaaagttttgtgaagttcattctataagtca |
23655546 |
T |
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| Q |
201 |
accgtccaactttattgatctgttgatttcatccat |
236 |
Q |
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| T |
23655547 |
atcgtccaactttactgatctggtgaagtcatccat |
23655582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 23803223 - 23802988
Alignment:
| Q |
1 |
gtattgtcccaaaatctttatttctgattcgaatcttttgatacacaattgagaatcatgtagtctcttagctacgaaaatgcaaccgttggaaagtgtt |
100 |
Q |
| |
|
|||||||||||||||| |||||||| | || || ||||||||| |||||||||||| |||||||||| | | || | | |||||| | ||| | | |
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| T |
23803223 |
gtattgtcccaaaatcattatttctaactcaaaccttttgataattgattgagaatcatatagtctcttaaccgccaagaaacgaccgttcggaagagct |
23803124 |
T |
|
| Q |
101 |
gttttgtacattatcccagtcactcccaccccaatgacattgtccttactaaagtattgcgttgcatgatagaattttgtgaagttcatcttataagcca |
200 |
Q |
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| ||||||||||| || | ||||| || ||||||||||||||| ||||| |||| ||||||||| | | ||||||||||||||| |||||| || |
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| T |
23803123 |
gccttgtacattattccgattactccaacaccaatgacattgtccaagctaaaatatttggttgcatgacaaagttttgtgaagttcattctataagtca |
23803024 |
T |
|
| Q |
201 |
accgtccaactttattgatctgttgatttcatccat |
236 |
Q |
| |
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| |||||||||||| ||||||| ||| |||||||| |
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| T |
23803023 |
atcgtccaactttactgatctggtgaagtcatccat |
23802988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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