View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10783_14 (Length: 364)
Name: NF10783_14
Description: NF10783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10783_14 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 54 - 333
Target Start/End: Original strand, 9564707 - 9564983
Alignment:
| Q |
54 |
tggtacttcattcttattcttttatttaggagccaatctattcttattaaaaatgtatgataaaatttacttttccnnnnnnnnnnnnnnnncatctttg |
153 |
Q |
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| T |
9564707 |
tggtacttcattcttattcttttatttaggacccaatctattcttattaaaaatgtatgataaaatttacttttccttttttttttttt---catctttg |
9564803 |
T |
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| Q |
154 |
acgtaacttatttattaattaggaatcttatcttatacagaaatttgtgttttttacgtaataatgtatacaataataaattggttaattagaaattgta |
253 |
Q |
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| T |
9564804 |
acgtaacttatttattaattaggaattttatcttatacagaaatttgtgttttttacgtaataatgtatacaataataaactggttcatcagaaattgta |
9564903 |
T |
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| Q |
254 |
gattgatataatacatgtaggtcacccnnnnnnnnttacatgcatatgtacataggatggatatttcaactaaatcattt |
333 |
Q |
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| T |
9564904 |
gattgatataatacatgtaggtcaccaaaaaaaaattacacgcatatgtacataggatggatatttcaactaaatcattt |
9564983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 146 - 333
Target Start/End: Original strand, 9573671 - 9573858
Alignment:
| Q |
146 |
catctttgacgtaacttatttattaattaggaatcttatcttatacagaaatttgtgttttttacgtaataatgtatacaataataaattggttaattag |
245 |
Q |
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| T |
9573671 |
catctttgacgtaacttatttattaattaggaattttatcttatacagatatttgtgttttttacgcaataatgtatacgataataaactggttaattag |
9573770 |
T |
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| Q |
246 |
aaattgtagattgatataatacatgtaggtcacccnnnnnnnnttacatgcatatgtacataggatggatatttcaactaaatcattt |
333 |
Q |
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| T |
9573771 |
aaattgtagattgatataatacatgtaggtcacccaaaaaaaattacatgcatatgtacataggatgtatatttcaactaaatcattt |
9573858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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