View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10783_16 (Length: 357)

Name: NF10783_16
Description: NF10783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10783_16
NF10783_16
[»] chr4 (9 HSPs)
chr4 (4-347)||(5425575-5425918)
chr4 (17-347)||(5348255-5348585)
chr4 (158-346)||(5399747-5399933)
chr4 (17-344)||(5352476-5352803)
chr4 (4-347)||(5376809-5377152)
chr4 (17-342)||(5410588-5410913)
chr4 (9-321)||(5500334-5500646)
chr4 (4-346)||(5391129-5391471)
chr4 (4-99)||(5399459-5399554)
[»] chr5 (1 HSPs)
chr5 (4-347)||(20326985-20327328)


Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 4 - 347
Target Start/End: Complemental strand, 5425918 - 5425575
Alignment:
Q  4 gcatcaacttcagaatttgaggtatttgaacttctccaacgctggctttcaaggacagatccctacagaaatttttcacctcaaaaggttggtcactctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5425918 gcatcaacttcagaatttgaggtatttgaacttctccaacgctggctttcaaggacagatccctacggaaatttttcacctcaaaaggttggtcactctt 5425819  T
Q  104 gatttgtcttcttcatttacttcacatcacgtcctcaaacttcagaatccaaatatagggatgtttatgaaaaacctcacggatatcacaaaattgtatc 203  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  5425818 gatttgtcttcttcatttacttcacatcacgtcctcaaacttgagaatccaaatatagggatgtttatgaaaaacttcacagatatcacaaaattgtatc 5425719  T
Q  204 tagatggtgtagcaatatcagccagcgcagaagaatggggtcgttctttatatccattggggggccttcgtgttctaagcatgtcatcatgcaatctctc 303  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5425718 tagatggtgtagcaatatcagccagtggagaagaatggggtcgttctttatatccattggggggccttcgtgttctaagcatgtcatcatgcaatctctc 5425619  T
Q  304 tggacctattgattcttcgctagcaaggcttcagtcactctctg 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5425618 tggacctattgattcttcgctagcaaggcttcagtcactctctg 5425575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 5348585 - 5348255
Alignment:
Q  17 aatttgaggtatttgaacttctccaacgctggctttcaaggacagatccctacagaaatttttcacctcaaaaggttggtcactcttgatttgtcttctt 116  Q
    ||||||| |||| ||||||| ||||| ||||| ||| | |||||||||||||  ||||||| ||||||||||||||||||| ||||||||||||| ||||    
T  5348585 aatttgatgtatctgaacttgtccaatgctggatttaagggacagatccctaaggaaatttctcacctcaaaaggttggtctctcttgatttgtcgtctt 5348486  T
Q  117 catttacttcacatcacgtcctcaaacttcagaatccaaatatagggatgtttatgaaaaacctcacggatatcacaaaattgtatctagatggtgtagc 216  Q
    |||||||||||||||||||||| |||||| || | ||||||||||  ||||||||   ||||||||| ||||||||||| |||||| |||||||||||||    
T  5348485 catttacttcacatcacgtcctaaaacttgagcagccaaatatagcaatgtttattcgaaacctcacagatatcacaaagttgtatttagatggtgtagc 5348386  T
Q  217 aatatcagccagcgcagaagaatggggtcgttctttatatccattggggggccttcgtgttctaagcatgtcatcatgcaatctctctggacctattgat 316  Q
    |||||| ||||||| |||||||||||| |||||||| | | |||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||    
T  5348385 aatatctgccagcggagaagaatggggccgttctttgtcttcattggggggactccgtgttctgagcatgtcatcatgcaatctctctggacctattgat 5348286  T
Q  317 tcttcgctagcaaggcttcagtcactctctg 347  Q
    || || ||||  |||||||||||||||||||    
T  5348285 tcctcactagttaggcttcagtcactctctg 5348255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 158 - 346
Target Start/End: Original strand, 5399747 - 5399933
Alignment:
Q  158 atagggatgtttatgaaaaacctcacggatatcacaaaattgtatctagatggtgtagcaatatcagccagcgcagaagaatggggtcgttctttatatc 257  Q
    ||||| |||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5399747 ataggaatgtttgtgaaaaacctca--gatatcacaaaattgtatctagatggtgtagcaatatcagccagcgcagaagaatggggtcgttctttatatc 5399844  T
Q  258 cattggggggccttcgtgttctaagcatgtcatcatgcaatctctctggacctattgattcttcgctagcaaggcttcagtcactctct 346  Q
    |||||||||| ||| |||| || |||||||||||| |||||||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  5399845 cattgggggggctttgtgtgctgagcatgtcatcaagcaatctctctggacctatccatttttcgctagcaaggcttcagtcactctct 5399933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 344
Target Start/End: Original strand, 5352476 - 5352803
Alignment:
Q  17 aatttgaggtatttgaacttctccaacgctggctttcaaggacagatccctacagaaatttttcacctcaaaaggttggtcactcttgatttgtcttctt 116  Q
    |||||||||||| | ||||| ||  | ||||||||| | || ||  |||| | |||||||| |||||| | ||||||||| |||||||||||||||||||    
T  5352476 aatttgaggtatctcaacttttctgatgctggctttgagggtcaagtcccgaaagaaatttctcaccttacaaggttggttactcttgatttgtcttctt 5352575  T
Q  117 catttacttcacatcacgtcctcaaacttcagaatccaaatatagggatgtttatgaaaaacctcacggatatcacaaaattgtatctagatggtgtagc 216  Q
     | |||||||||||||   | | |||||| ||||||||||||||| ||   || ||||||||||||| ||||||||| ||||||||||||||||||||||    
T  5352576 taattacttcacatcagaacataaaacttgagaatccaaatatagagactcttttgaaaaacctcacagatatcacagaattgtatctagatggtgtagc 5352675  T
Q  217 aatatcagccagcgcagaagaatggggtcgttctttatatccattggggggccttcgtgttctaagcatgtcatcatgcaatctctctggacctattgat 316  Q
    |||||| ||||||| |||| |||||| |||| |||||| | || ||  ||| ||||||||| | |||||||||||||||||||||||||||||| |||||    
T  5352676 aatatctgccagcggagaaaaatgggttcgtgctttatcttcactgaagggtcttcgtgttttgagcatgtcatcatgcaatctctctggaccttttgat 5352775  T
Q  317 tcttcgctagcaaggcttcagtcactct 344  Q
    ||||| ||| | | |||||| |||||||    
T  5352776 tcttcactatccaagcttcaatcactct 5352803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 4 - 347
Target Start/End: Original strand, 5376809 - 5377152
Alignment:
Q  4 gcatcaacttcagaatttgaggtatttgaacttctccaacgctggctttcaaggacagatccctacagaaatttttcacctcaaaaggttggtcactctt 103  Q
    |||| |||| ||||||||||||||| | ||||| ||  | ||||||||| | || ||| |||| | |||||||  |||||| | ||||||||| ||||||    
T  5376809 gcataaactgcagaatttgaggtatctcaacttgtctgatgctggctttgaggggcaggtcccaaaagaaattgctcaccttacaaggttggttactctt 5376908  T
Q  104 gatttgtcttcttcatttacttcacatcacgtcctcaaacttcagaatccaaatatagggatgtttatgaaaaacctcacggatatcacaaaattgtatc 203  Q
    ||||||||||||| | ||||||||| |||   ||| |||||| |||||||||||||||  ||| || |||||||||| || ||||||||| |||||||||    
T  5376909 gatttgtcttctttaattacttcacgtcaaagcctaaaacttgagaatccaaatatagaaatgcttgtgaaaaaccttacagatatcacagaattgtatc 5377008  T
Q  204 tagatggtgtagcaatatcagccagcgcagaagaatggggtcgttctttatatccattggggggccttcgtgttctaagcatgtcatcatgcaatctctc 303  Q
    |||| ||||||||||||||  |||||| ||| |||||||||||| |||||| |  ||||| |||  |||||||| | | |||||| || |||||||||||    
T  5377009 tagacggtgtagcaatatcttccagcggagatgaatggggtcgtgctttatctttattggagggtgttcgtgttttgaccatgtcgtcgtgcaatctctc 5377108  T
Q  304 tggacctattgattcttcgctagcaaggcttcagtcactctctg 347  Q
     ||| ||||||||||||| ||||| | |||||||||||||||||    
T  5377109 aggagctattgattcttcactagctaagcttcagtcactctctg 5377152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 342
Target Start/End: Original strand, 5410588 - 5410913
Alignment:
Q  17 aatttgaggtatttgaacttctccaacgctggctttcaaggacagatccctacagaaatttttcacctcaaaaggttggtcactcttgatttgtcttctt 116  Q
    |||||||||||||| ||||| || || || |||||| | |||||| | ||    ||||||| |||||||||||||||||||| ||||||||| ||||||     
T  5410588 aatttgaggtatttaaacttgtctaatgccggctttaagggacaggttccggaggaaatttctcacctcaaaaggttggtcattcttgatttttcttcta 5410687  T
Q  117 catttacttcacatcacgtcctcaaacttcagaatccaaatatagggatgtttatgaaaaacctcacggatatcacaaaattgtatctagatggtgtagc 216  Q
     ||||| |||||  ||   | | |||||| |||| ||||||||||| ||| || || ||||||| || ||||| ||| |||| |||||||||||||| ||    
T  5410688 aatttatttcactgcagaacttaaaacttgagaagccaaatataggaatgcttgtgcaaaaccttacagatattacagaattatatctagatggtgttgc 5410787  T
Q  217 aatatcagccagcgcagaagaatggggtcgttctttatatccattggggggccttcgtgttctaagcatgtcatcatgcaatctctctggacctattgat 316  Q
    ||||||||| || | ||| |||||||||| | |||||| |  ||||  ||| ||||||||| | ||||||||||||||||||||||||||||||||||||    
T  5410788 aatatcagctaggggagaggaatggggtcatcctttatctttattgaaggggcttcgtgttttgagcatgtcatcatgcaatctctctggacctattgat 5410887  T
Q  317 tcttcgctagcaaggcttcagtcact 342  Q
    ||||| ||||| | |||||| |||||    
T  5410888 tcttcactagctaagcttcaatcact 5410913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 9 - 321
Target Start/End: Original strand, 5500334 - 5500646
Alignment:
Q  9 aacttcagaatttgaggtatttgaacttctccaacgctggctttcaaggacagatccctacagaaatttttcacctcaaaaggttggtcactcttgattt 108  Q
    |||| ||||||||||||||| ||||||| ||  | ||||||||| | || ||| ||||   |||||||| |||||| | |||||| || | ||||||| |    
T  5500334 aactgcagaatttgaggtatctgaacttgtctgatgctggctttgaggggcaggtcccagaagaaatttctcacctaacaaggttagttattcttgatat 5500433  T
Q  109 gtcttcttcatttacttcacatcacgtcctcaaacttcagaatccaaatatagggatgtttatgaaaaacctcacggatatcacaaaattgtatctagat 208  Q
    |||||||||| |||||||| |||||  ||| ||||||  ||| ||||||||    ||| || || ||||| |||| ||||||||| |||| ||| |||||    
T  5500434 gtcttcttcaattacttcagatcacagcctaaaacttaggaagccaaatattacaatgcttgtgcaaaacttcaccgatatcacagaattatatttagat 5500533  T
Q  209 ggtgtagcaatatcagccagcgcagaagaatggggtcgttctttatatccattggggggccttcgtgttctaagcatgtcatcatgcaatctctctggac 308  Q
    |||||||||||||| ||||||| ||| |||||||||||| |||||| | | || |  || ||||||||||| ||||||||||||||||||||||||||||    
T  5500534 ggtgtagcaatatctgccagcggagaggaatggggtcgtgctttatcttcgttagaaggtcttcgtgttctgagcatgtcatcatgcaatctctctggac 5500633  T
Q  309 ctattgattcttc 321  Q
    | |||||||||||    
T  5500634 ccattgattcttc 5500646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 4 - 346
Target Start/End: Original strand, 5391129 - 5391471
Alignment:
Q  4 gcatcaacttcagaatttgaggtatttgaacttctccaacgctggctttcaaggacagatccctacagaaatttttcacctcaaaaggttggtcactctt 103  Q
    |||| |||| ||||||||||| ||| | ||||| ||| | ||||||||| | ||  |  |||| | |||||||| |||||||| ||||||||| ||||||    
T  5391129 gcataaactgcagaatttgagctatctcaacttgtccgatgctggctttgacgggtatgtcccaatagaaatttctcacctcacaaggttggttactctt 5391228  T
Q  104 gatttgtcttcttcatttacttcacatcacgtcctcaaacttcagaatccaaatatagggatgtttatgaaaaacctcacggatatcacaaaattgtatc 203  Q
    |||||||| ||| | |||| |||||||||   ||| ||||||   || | |||||| | |||  || |||||||||||||  |||||| | |||||||||    
T  5391229 gatttgtcatctacgtttatttcacatcagagcctaaaacttgcaaagcaaaatatggcgatacttgtgaaaaacctcacaaatatcatagaattgtatc 5391328  T
Q  204 tagatggtgtagcaatatcagccagcgcagaagaatggggtcgttctttatatccattggggggccttcgtgttctaagcatgtcatcatgcaatctctc 303  Q
    |||||||||| |||||||   |||||| ||| |||||||||||| |||||| | | |||| ||| ||||||||| ||||||||||||| |||||||||||    
T  5391329 tagatggtgtggcaatatgtaccagcggagaggaatggggtcgtgctttatcttctttggagggtcttcgtgttttaagcatgtcatcctgcaatctctc 5391428  T
Q  304 tggacctattgattcttcgctagcaaggcttcagtcactctct 346  Q
    ||||||||||||||| || ||||  | |||||| |||||||||    
T  5391429 tggacctattgattcgtcactagttaagcttcaatcactctct 5391471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 5399459 - 5399554
Alignment:
Q  4 gcatcaacttcagaatttgaggtatttgaacttctccaacgctggctttcaaggacagatccctacagaaatttttcacctcaaaaggttggtcac 99  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||  |||||||||||||||||||||||||||||    
T  5399459 gcatcaacttcagaatttgaggtatttgaacttctccaacattggctttgaaggacagatccctaaggaaatttttcacctcaaaaggttggtcac 5399554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 4 - 347
Target Start/End: Original strand, 20326985 - 20327328
Alignment:
Q  4 gcatcaacttcagaatttgaggtatttgaacttctccaacgctggctttcaaggacagatccctacagaaatttttcacctcaaaaggttggtcactctt 103  Q
    |||| |||| ||||||||||||||| | ||||| ||  | ||||||||| | |  ||| |||| | |||||||  |||||| | ||||||||| ||||||    
T  20326985 gcataaactgcagaatttgaggtatctcaacttgtctgatgctggctttgaggagcaggtcccaaaagaaattgctcaccttacaaggttggttactctt 20327084  T
Q  104 gatttgtcttcttcatttacttcacatcacgtcctcaaacttcagaatccaaatatagggatgtttatgaaaaacctcacggatatcacaaaattgtatc 203  Q
    ||||||||||||| | ||||||||| |||   ||| |||||| |||||||||||||||  ||| || |||||||||| || ||||||||| |||||||||    
T  20327085 gatttgtcttctttaattacttcacgtcaaaacctaaaacttgagaatccaaatatagaaatgcttgtgaaaaaccttacagatatcacagaattgtatc 20327184  T
Q  204 tagatggtgtagcaatatcagccagcgcagaagaatggggtcgttctttatatccattggggggccttcgtgttctaagcatgtcatcatgcaatctctc 303  Q
    |||| ||||||||||||||  |||||| ||| || ||||||||| |||||| |  ||||| |||  |||||||| | |||||||| || |||||||||||    
T  20327185 tagacggtgtagcaatatcttccagcggagatgagtggggtcgtgctttatctttattggagggtgttcgtgttttgagcatgtcgtcgtgcaatctctc 20327284  T
Q  304 tggacctattgattcttcgctagcaaggcttcagtcactctctg 347  Q
     ||||||||||||||||| ||||| | |||||||||||||||||    
T  20327285 aggacctattgattcttcactagctaagcttcagtcactctctg 20327328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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