View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10783_17 (Length: 341)

Name: NF10783_17
Description: NF10783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10783_17
NF10783_17
[»] chr3 (14 HSPs)
chr3 (1-337)||(30201134-30201473)
chr3 (25-293)||(30227335-30227603)
chr3 (159-337)||(30230454-30230632)
chr3 (24-292)||(30214705-30214974)
chr3 (159-337)||(30223213-30223391)
chr3 (25-127)||(29856833-29856935)
chr3 (43-130)||(29649039-29649126)
chr3 (37-118)||(29751850-29751931)
chr3 (45-128)||(36333932-36334015)
chr3 (43-102)||(36309777-36309835)
chr3 (57-113)||(30239053-30239109)
chr3 (43-130)||(29712985-29713072)
chr3 (172-207)||(29856987-29857022)
chr3 (81-129)||(30223140-30223188)
[»] chr7 (2 HSPs)
chr7 (25-328)||(16644529-16644834)
chr7 (25-328)||(17618890-17619195)
[»] chr6 (4 HSPs)
chr6 (25-102)||(5569440-5569517)
chr6 (25-102)||(5574418-5574495)
chr6 (161-204)||(5569328-5569371)
chr6 (161-204)||(5574306-5574349)
[»] scaffold0037 (1 HSPs)
scaffold0037 (189-317)||(15772-15900)
[»] chr8 (3 HSPs)
chr8 (189-317)||(17036970-17037098)
chr8 (43-127)||(1152915-1152999)
chr8 (27-102)||(14934518-14934593)
[»] chr1 (3 HSPs)
chr1 (30-122)||(16955661-16955753)
chr1 (30-102)||(16966199-16966271)
chr1 (156-265)||(16955508-16955617)
[»] chr5 (3 HSPs)
chr5 (30-132)||(11634956-11635058)
chr5 (43-107)||(16053594-16053658)
chr5 (29-113)||(25784287-25784371)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 30201134 - 30201473
Alignment:
Q  1 tcctaaagacattatagaaaacatt--tcaaaggcttaataccattgaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaag 98  Q
    |||||||||||||| ||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30201134 tcctaaagacattacagaaaacattcttcaaaggcttagtaccattgaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaag 30201233  T
Q  99 gatcgtatcatgtggtgtactattcacatgatagacaatgacaatgta--cctacaataatatggatttggtaaagatttgtcgttatgctgttgaacga 196  Q
    |||| | ||||||||   || ||||| |||||||||||||||| | ||  ||||||||||||| ||| |||||||||||||||||||||||||||| |||    
T  30201234 gatcctctcatgtggcacaccattcatatgatagacaatgacagt-tacccctacaataatatagatctggtaaagatttgtcgttatgctgttgatcga 30201332  T
Q  197 agttgcggtcagctgcaagacattgagattgtgtctttttgcaccgacgatctccttcaatacatagctagctggtaatattattctccttttgctcact 296  Q
    ||||| |||||  ||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30201333 agttgtggtcacttgcgagacattgagatcgcgtctttttgcaccgacgatctccttcaatacatagctagttggtaatattattctccttttgctcact 30201432  T
Q  297 ttcaagtcttgtgaaattacttattcatttattgatgatgt 337  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  30201433 ttcaagtcttgtgaaattacttattcatttatttatgatgt 30201473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 25 - 293
Target Start/End: Original strand, 30227335 - 30227603
Alignment:
Q  25 ttcaaaggcttaataccattgaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcgtatcatgtggtgtactattca 124  Q
    |||||||||||  |||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| | || ||| |    
T  30227335 ttcaaaggcttggtaccatcgagattgtgacaagtgcatgtcaagtgtgtcctctatagtggaacatttgcaaggatcctctcatgtggcgcaccattta 30227434  T
Q  125 catgatagacaatgacaatg-tacctacaataatatggatttggtaaagatttgtcgttatgctgttgaacgaagttgcggtcagctgcaagacattgag 223  Q
    ||| | ||||||||||  |  | ||||||||| ||||||||||||| ||||||||||||||| ||||||| |||||||||||||  || |||||||||||    
T  30227435 catcaaagacaatgaccgttatccctacaatactatggatttggtagagatttgtcgttatgatgttgaa-gaagttgcggtcacttggaagacattgag 30227533  T
Q  224 attgtgtctttttgcaccgacgatctccttcaatacatagctagctggtaatattattctccttttgctc 293  Q
    ||||||||||||||| | ||| ||||||||||   ||||| |||||||||||||| || |||||||||||    
T  30227534 attgtgtctttttgccctgacaatctccttcagaccatagttagctggtaatattgttttccttttgctc 30227603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 159 - 337
Target Start/End: Original strand, 30230454 - 30230632
Alignment:
Q  159 tggatttggtaaagatttgtcgttatgctgttgaacgaagttgcggtcagctgcaagacattgagattgtgtctttttgcaccgacgatctccttcaata 258  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||| || || |||||||||||||||||||||||||||| || ||||||||||| ||    
T  30230454 tggatttggtaaagatttgtcgttatgctgttgaacaaagctgcggtgagttggaagacattgagattgtgtctttttgcactgatgatctccttcagta 30230553  T
Q  259 catagctagctggtaatattattctccttttgctcactttcaagtcttgtgaaattacttattcatttattgatgatgt 337  Q
    ||||||||| ||||||||||||| ||||||||||||||||||| |||||  |||||||||||||||||||| |||||||    
T  30230554 catagctagttggtaatattattttccttttgctcactttcaattcttgcaaaattacttattcatttatttatgatgt 30230632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 292
Target Start/End: Original strand, 30214705 - 30214974
Alignment:
Q  24 tttcaaaggcttaataccattgaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcgtatcatgtggtgtactattc 123  Q
    |||||||| |||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |||   ||||||     
T  30214705 tttcaaagacttggtaccattgagattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcctcttatatggcacactattt 30214804  T
Q  124 acatgatagacaatgacaatg-tacctacaataatatggatttggtaaagatttgtcgttatgctgttgaacgaagttgcggtcagctgcaagacattga 222  Q
    |||||| || |||  ||  |  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||    
T  30214805 acatgagagtcaacaaccgtcatccctacaataatatggatttggtaaagatttgtcgttatgctgttgaacgaagttgcggtcacttggaagacattga 30214904  T
Q  223 gattgtgtctttttgcaccgacgatctccttcaatacatagctagctggtaatattattctccttttgct 292  Q
    ||| |||||||||||||  |  ||||||||||||  |||||  || |||||||||| || ||||||||||    
T  30214905 gatcgtgtctttttgcaatggtgatctccttcaaaccatagtgagttggtaatattcttttccttttgct 30214974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 159 - 337
Target Start/End: Original strand, 30223213 - 30223391
Alignment:
Q  159 tggatttggtaaagatttgtcgttatgctgttgaacgaagttgcggtcagctgcaagacattgagattgtgtctttttgcaccgacgatctccttcaata 258  Q
    ||||||||||||||||||||||||||||||||| || ||| ||||||||  || |||||||||||||||||||||||||||| || ||||||||||| ||    
T  30223213 tggatttggtaaagatttgtcgttatgctgttggacaaagctgcggtcacttggaagacattgagattgtgtctttttgcactgatgatctccttcacta 30223312  T
Q  259 catagctagctggtaatattattctccttttgctcactttcaagtcttgtgaaattacttattcatttattgatgatgt 337  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||  ||||||||||| |||||||| |||||||    
T  30223313 catagctagttggtaatattattttccttttgctcactttcaagtcttgcaaaattacttatacatttatttatgatgt 30223391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 29856833 - 29856935
Alignment:
Q  25 ttcaaaggcttaataccattgaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcgtatcatgtggtgtactattca 124  Q
    ||||||||||| |||| |||||||| |||| ||||||||||||||| ||||||||||||||| |||| || || |||| | || ||||| |||| |||||    
T  29856833 ttcaaaggcttgatacaattgaaatcgtgaaaagtgcatgtcaagtttgtcctctatggtgggacatatgtaaagatcctctcctgtggcgtaccattca 29856932  T
Q  125 cat 127  Q
    |||    
T  29856933 cat 29856935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 29649039 - 29649126
Alignment:
Q  43 ttgaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcgtatcatgtggtgtactattcacatgat 130  Q
    |||||||||| |||| |||||| | ||| |||||||||| |||||||||||| ||||||| | |||||||| |||| |||||||||||    
T  29649039 ttgaaattgtaacaaatgcatgcctagtatgtcctctatcgtggaacatttgtaaggatcctctcatgtggcgtaccattcacatgat 29649126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 29751850 - 29751931
Alignment:
Q  37 ataccattgaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcgtatcatgtggtgtac 118  Q
    ||||| |||||||||||||||||||| || | || |||||||| ||||||||| |||||||||||| | |||||||| ||||    
T  29751850 ataccgttgaaattgtgacaagtgcacgtaatgtttgtcctctttggtggaacgtttgcaaggatcctctcatgtggagtac 29751931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 36334015 - 36333932
Alignment:
Q  45 gaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcgtatcatgtggtgtactattcacatg 128  Q
    ||||||||||| ||||| || | ||||||||| | ||||||||||||||||||||||| | |||||||| | ||||||| ||||    
T  36334015 gaaattgtgacgagtgcttgccgagtgtgtccacaatggtggaacatttgcaaggatcctctcatgtggcgcactattcgcatg 36333932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 36309835 - 36309777
Alignment:
Q  43 ttgaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatc 102  Q
    ||||||||||||| |||||||| | ||||||||| | |||||||||||||||||||||||    
T  36309835 ttgaaattgtgacgagtgcatg-cgagtgtgtccgcaatggtggaacatttgcaaggatc 36309777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 30239053 - 30239109
Alignment:
Q  57 agtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcgtatcatgtgg 113  Q
    |||||||| | ||| |||||||||||||||||||| |||||||||| | ||||||||    
T  30239053 agtgcatgcctagtatgtcctctatggtggaacatatgcaaggatcctctcatgtgg 30239109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 29712985 - 29713072
Alignment:
Q  43 ttgaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcgtatcatgtggtgtactattcacatgat 130  Q
    |||||||||||||||||||| || | || ||| || | ||| |||| ||||||||||||| | | |||||| |||| |||||||||||    
T  29712985 ttgaaattgtgacaagtgcacgtaatgtttgttctttgtggcggaatatttgcaaggatcctctaatgtggcgtaccattcacatgat 29713072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 29856987 - 29857022
Alignment:
Q  172 gatttgtcgttatgctgttgaacgaagttgcggtca 207  Q
    ||||||| ||||||||||||||||||||||||||||    
T  29856987 gatttgttgttatgctgttgaacgaagttgcggtca 29857022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 30223140 - 30223188
Alignment:
Q  81 tggtggaacatttgcaaggatcgtatcatgtggtgtactattcacatga 129  Q
    |||||||||||||||||||||| | |||||||| | || ||||||||||    
T  30223140 tggtggaacatttgcaaggatcctctcatgtggcgcaccattcacatga 30223188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 25 - 328
Target Start/End: Complemental strand, 16644834 - 16644529
Alignment:
Q  25 ttcaaaggcttaataccattgaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcgtatcatgtggtgtactattca 124  Q
    |||||||||||||| |  |||||||||||||||||||||  | ||||||| ||||||||||||||||||||||||| | | |||||||| | || |||||    
T  16644834 ttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctctatggtggaacatttgcaaggaacctctcatgtggcgcaccattca 16644735  T
Q  125 catgatagacaatgacaat-gtacctacaataatatggatttggtaaagatttgtcgttatgctgttgaacgaagttgcggtcagctgcaagacattgag 223  Q
    ||||  | ||||||||  | || ||| ||| ||||||||||||||||| |||||||||||||||||| || ||||||||||||| ||| |||| |||||     
T  16644734 catgggatacaatgaccgttgtccctgcaacaatatggatttggtaaatatttgtcgttatgctgttaaatgaagttgcggtcacctgaaagaaattgaa 16644635  T
Q  224 attgtgtctttttgcaccgacgatctccttcaatacatagctagctggt-aatattattctccttttgctcactttcaagtcttgtgaaattacttattc 322  Q
    |||| |  |||||||||  ||||||||||| ||||||||||    |||| ||| ||||| |||||||| |  |||| |||||||| ||||||||  ||||    
T  16644634 attgagcatttttgcactaacgatctccttaaatacatagcagagtggtaaattttattttccttttgttttctttaaagtcttgcgaaattacgcattc 16644535  T
Q  323 atttat 328  Q
    ||||||    
T  16644534 atttat 16644529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 25 - 328
Target Start/End: Complemental strand, 17619195 - 17618890
Alignment:
Q  25 ttcaaaggcttaataccattgaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcgtatcatgtggtgtactattca 124  Q
    |||||||||||||| |  |||||||||||||||||||||  | ||||||| ||||||||||||||||||||||||| | | |||||||| | || |||||    
T  17619195 ttcaaaggcttaatgcagttgaaattgtgacaagtgcatccctagtgtgtgctctatggtggaacatttgcaaggaacctctcatgtggcgcaccattca 17619096  T
Q  125 catgatagacaatgacaat-gtacctacaataatatggatttggtaaagatttgtcgttatgctgttgaacgaagttgcggtcagctgcaagacattgag 223  Q
    ||||  | ||||||||  | || ||| ||| ||||||||||||||||| |||||||||||||||||| || ||||||||||||| ||| |||| |||||     
T  17619095 catgggatacaatgaccgttgtccctgcaacaatatggatttggtaaatatttgtcgttatgctgttaaatgaagttgcggtcacctgaaagaaattgaa 17618996  T
Q  224 attgtgtctttttgcaccgacgatctccttcaatacatagctagctggt-aatattattctccttttgctcactttcaagtcttgtgaaattacttattc 322  Q
    |||| |  |||||||||  ||||||||||| ||||||||||    |||| ||| ||||| |||||||| |  |||| |||||||| ||||||||  ||||    
T  17618995 attgagcatttttgcactaacgatctccttaaatacatagcagagtggtaaattttattttccttttgttttctttaaagtcttgcgaaattacgcattc 17618896  T
Q  323 atttat 328  Q
    ||||||    
T  17618895 atttat 17618890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 5569517 - 5569440
Alignment:
Q  25 ttcaaaggcttaataccattgaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatc 102  Q
    ||||||||||| |||| |||||  | || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5569517 ttcaaaggcttgatactattgatgtagtaacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatc 5569440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 5574495 - 5574418
Alignment:
Q  25 ttcaaaggcttaataccattgaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatc 102  Q
    ||||||||||| |||| |||||  | || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5574495 ttcaaaggcttgatactattgatgtagtaacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatc 5574418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 5569371 - 5569328
Alignment:
Q  161 gatttggtaaagatttgtcgttatgctgttgaacgaagttgcgg 204  Q
    |||||||| |||||||||| |||||||||||| |||||||||||    
T  5569371 gatttggtgaagatttgtcattatgctgttgatcgaagttgcgg 5569328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 5574349 - 5574306
Alignment:
Q  161 gatttggtaaagatttgtcgttatgctgttgaacgaagttgcgg 204  Q
    |||||||| |||||||||| |||||||||||| |||||||||||    
T  5574349 gatttggtgaagatttgtcattatgctgttgatcgaagttgcgg 5574306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 317
Target Start/End: Original strand, 15772 - 15900
Alignment:
Q  189 ttgaacgaagttgcggtcagctgcaagacattgagattgtgtctttttgcaccgacgatctccttcaatacatagctagctggtaatattattctccttt 288  Q
    ||||| ||||||| ||||| ||| |||| ||| | ||||||||||||||||| |||||||| ||| |||||||||||  |||||||||| ||| |  |||    
T  15772 ttgaaagaagttgtggtcaactggaagatattcaaattgtgtctttttgcactgacgatctacttaaatacatagctgactggtaatataatttttattt 15871  T
Q  289 tgctcactttcaagtcttgtgaaattact 317  Q
    |||| ||||||||||||||  ||||||||    
T  15872 tgcttactttcaagtcttgcaaaattact 15900  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 317
Target Start/End: Complemental strand, 17037098 - 17036970
Alignment:
Q  189 ttgaacgaagttgcggtcagctgcaagacattgagattgtgtctttttgcaccgacgatctccttcaatacatagctagctggtaatattattctccttt 288  Q
    ||||| ||||||| ||||| ||| |||| ||| | ||||||||||||||||| |||||||| ||| |||||||||||  |||||||||| ||| |  |||    
T  17037098 ttgaaagaagttgtggtcaactggaagatattcaaattgtgtctttttgcactgacgatctacttaaatacatagctgactggtaatataatttttattt 17036999  T
Q  289 tgctcactttcaagtcttgtgaaattact 317  Q
    |||| ||||||||||||||  ||||||||    
T  17036998 tgcttactttcaagtcttgcaaaattact 17036970  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 1152999 - 1152915
Alignment:
Q  43 ttgaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcgtatcatgtggtgtactattcacat 127  Q
    |||||||||| ||||||||| || | || |||||||| |||||| ||||||||||||||| | | |||||| |||| ||||||||    
T  1152999 ttgaaattgtaacaagtgcacgtaatgtttgtcctctgtggtggcacatttgcaaggatcctctaatgtggcgtaccattcacat 1152915  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 14934593 - 14934518
Alignment:
Q  27 caaaggcttaataccattgaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatc 102  Q
    |||||||||  | ||||||||||  || | ||||||||||||||||| ||||| |||||||| |||| ||||||||    
T  14934593 caaaggcttggtgccattgaaatattggctagtgcatgtcaagtgtgccctctttggtggaatattttcaaggatc 14934518  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 16955753 - 16955661
Alignment:
Q  30 aggcttaataccattgaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcgtatcatgtggtgtactatt 122  Q
    |||||| |||| ||||||||||| ||||||| |||||||||||| ||| |||||||||| ||||||||||||| | |||||||| | ||||||    
T  16955753 aggcttgatactattgaaattgtcacaagtgtatgtcaagtgtgccctttatggtggaatatttgcaaggatcctctcatgtggcgcactatt 16955661  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 16966271 - 16966199
Alignment:
Q  30 aggcttaataccattgaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatc 102  Q
    |||||| |||| |||||||| || ||||||| |||||||||||||||| |||||||||| |||||||||||||    
T  16966271 aggcttgatactattgaaatagtcacaagtgtatgtcaagtgtgtcctttatggtggaatatttgcaaggatc 16966199  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 265
Target Start/End: Complemental strand, 16955617 - 16955508
Alignment:
Q  156 atatggatttggtaaagatttgtcgttatgctgttgaacgaagttgcggtcagctgcaagacattgagattgtgtctttttgcaccgacgatctccttca 255  Q
    ||||||||||||  | |||||| || ||||| ||||| |||||||| ||||| || ||||| ||||| |||| || |||||  ||||| |||||| || |    
T  16955617 atatggatttggagatgatttgccgctatgcagttgagcgaagttgtggtcaacttcaagagattgatattgagttttttttaaccgatgatctctttaa 16955518  T
Q  256 atacatagct 265  Q
    ||||||||||    
T  16955517 atacatagct 16955508  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 11634956 - 11635058
Alignment:
Q  30 aggcttaataccattgaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcgtatcatgtggtgtactattcacatga 129  Q
    |||||| |||||||||| || || | || |||||||  ||| |||||||||||||||| ||| |||||||||| | |||||||| |||| |||| |||||    
T  11634956 aggcttgataccattgacatagtaaaaaatgcatgtatagtatgtcctctatggtggagcatatgcaaggatcctctcatgtggcgtaccattcgcatga 11635055  T
Q  130 tag 132  Q
    |||    
T  11635056 tag 11635058  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 16053658 - 16053594
Alignment:
Q  43 ttgaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcgtatc 107  Q
    |||||||| | |||||||||||   |||||| ||||| |||||||||||||||||||||| ||||    
T  16053658 ttgaaattttaacaagtgcatgcggagtgtgccctctttggtggaacatttgcaaggatcctatc 16053594  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 25784371 - 25784287
Alignment:
Q  29 aaggcttaataccattgaaattgtgacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcgtatcatgtgg 113  Q
    ||||||||||||| | ||  | || ||||||| |||||||||||| |||||||||||||| || || || |||| | ||||||||    
T  25784371 aaggcttaataccttcgacgtagttacaagtgtatgtcaagtgtgccctctatggtggaatatatgtaaagatcctttcatgtgg 25784287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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