View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10783_18 (Length: 328)
Name: NF10783_18
Description: NF10783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10783_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 21 - 327
Target Start/End: Complemental strand, 12719883 - 12719577
Alignment:
| Q |
21 |
ttattttttatatacaattgttatagtgtgttatattagtaattataattttggatttctttcacaaacttaatcaaatgtttcgactcaaccatttgaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12719883 |
ttattttttatatacaattgttatagtgtgtaatattagtaattataattttggatttctttcacaaacttaatcaaatgtttcgactcaaccatttgaa |
12719784 |
T |
|
| Q |
121 |
ctacactatatcctagaaacaaaagtaagtacaaataatttaagttcatagaattgtgtttatttttgaatttgtgtagcaaattagcaatagtagaaca |
220 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12719783 |
ctacactacatcctagaaac-aaagtaagtacaaataatttaagttcatagaattgtgtttatttttgaatttgtgtagcaaattagcaatagtagaaca |
12719685 |
T |
|
| Q |
221 |
tcaaaaattatatttcgaat-nnnnnnnnnnnnnnnncccttccttttggcttgtacctatgaataatatagccctcgatcactttgccttgtttgtttt |
319 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12719684 |
tcaaaaattatatttcgaataaaagaaaaaaataaaacccttccttttggcttgtacctatgaataatatagccctcgatcactttgccttgtttgtttt |
12719585 |
T |
|
| Q |
320 |
ggcgggtt |
327 |
Q |
| |
|
|||||||| |
|
|
| T |
12719584 |
ggcgggtt |
12719577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 327
Target Start/End: Complemental strand, 12781108 - 12780803
Alignment:
| Q |
21 |
ttattttttatatacaattgttatagtgtgttatattagtaattataattttggatttctttcacaaacttaatcaaatgtttcgactcaaccatttgaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12781108 |
ttattttttatatacaattgttatagtgtgttatattagtaat-ataattttggatttctttcacaaacttaatcaaatgtttcgactcaaccatttgaa |
12781010 |
T |
|
| Q |
121 |
ctacactatatcctagaaacaaaagtaagtacaaataatttaagttcatagaattgtgtttatttttgaatttgtgtagcaaattagcaatagtagaaca |
220 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12781009 |
ctacactacatcctagaaacaaa-gtaagtacaaataatttaagttcatagaattgtgtttatttttgaatttgtgtagcaaattagcaatagtagaaca |
12780911 |
T |
|
| Q |
221 |
tcaaaaattatatttcgaat-nnnnnnnnnnnnnnnncccttccttttggcttgtacctatgaataatatagccctcgatcactttgccttgtttgtttt |
319 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12780910 |
tcaaaaattatatttcgaataaaagaaaaaaataaaacccttccttttggcttgtacctatgaataatatagccctcgatcactttgccttgtttgtttt |
12780811 |
T |
|
| Q |
320 |
ggcgggtt |
327 |
Q |
| |
|
|||||||| |
|
|
| T |
12780810 |
ggcgggtt |
12780803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University