View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10783_2 (Length: 548)
Name: NF10783_2
Description: NF10783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10783_2 |
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Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 14 - 528
Target Start/End: Complemental strand, 33242183 - 33241669
Alignment:
| Q |
14 |
tgaatgtccacgtaaagaaccttttctgttaactttcctatgctagaccaattaacaaaccaaaatgaggagttgccatcacccaatcagaaatcaaaac |
113 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
33242183 |
tgaatgtccacataaagaaccttttctgttaactttcctatcccagaccaattaacaaaccaaaatgaggagttgtcatcacccaatcggaaatcaaaac |
33242084 |
T |
|
| Q |
114 |
catccctaagagcaaacctagctttcataatagcattccaagtggctgatcctgatttcctactaacagtgagaagcttggctgcatgaaaatacttgtg |
213 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
33242083 |
catccctaagagtaaacctagctttcataatagcattccaagtgactgatcctgatttcctggtaacagtgagaagcttgtctgcatgaaaatacttgtg |
33241984 |
T |
|
| Q |
214 |
agttaaaacctgcacccataaagaatcacaattttgatgtaacctccaaactaatctgcccagcagagatgtgttagcctctcttgccttcctgattccg |
313 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
33241983 |
agttaaaaccttcacccataaagaatcacaattttgatgtaacctccaaactaatctgcccagcagagatgtgttagcctctctagccttcctgatttcg |
33241884 |
T |
|
| Q |
314 |
agaccacctagctttttgggtttggttattttctcccagccaaataagtagatcctaaaattggaagaacctttccactagaaatttattgccaatctat |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33241883 |
agaccacctagctttttgggtttggttattttctcccagccaactaagtagatcctaaaattggaagaacctttccacaagaaatttattgccaatctat |
33241784 |
T |
|
| Q |
414 |
caatagactcacaagttgattggggcaaccaaaccccttgcatataataatagggaatagaatttaatacagatttaaccaaagtcattcgactagcttt |
513 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
33241783 |
caatagactcacaagttgattggggcaaccaagccacttgcatataataatagggaatagaatttaatacagatttaaccaaagtcattcgaccaacttt |
33241684 |
T |
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| Q |
514 |
gtttaacaggtgatg |
528 |
Q |
| |
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||| ||||||||||| |
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| T |
33241683 |
gttcaacaggtgatg |
33241669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 14 - 528
Target Start/End: Complemental strand, 33250104 - 33249590
Alignment:
| Q |
14 |
tgaatgtccacgtaaagaaccttttctgttaactttcctatgctagaccaattaacaaaccaaaatgaggagttgccatcacccaatcagaaatcaaaac |
113 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
33250104 |
tgaatgtccacataaagaaccttttctgttaactttcctatcccagaccaattaacaaaccaaaatgaggagttgtcatcacccaatcggaaatcaaaac |
33250005 |
T |
|
| Q |
114 |
catccctaagagcaaacctagctttcataatagcattccaagtggctgatcctgatttcctactaacagtgagaagcttggctgcatgaaaatacttgtg |
213 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
33250004 |
catccctaagagtaaacctagctttcataatagcattccaagtgactgatcctgatttcctggtaacagtgagaagcttgtctgcatgaaaatacttgtg |
33249905 |
T |
|
| Q |
214 |
agttaaaacctgcacccataaagaatcacaattttgatgtaacctccaaactaatctgcccagcagagatgtgttagcctctcttgccttcctgattccg |
313 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
33249904 |
agttaaaaccttcacccataaagaatcacaattttgatgtaacctccaaactaatctgcccagcagagatgtgttagcctctctagccttcctgatttcg |
33249805 |
T |
|
| Q |
314 |
agaccacctagctttttgggtttggttattttctcccagccaaataagtagatcctaaaattggaagaacctttccactagaaatttattgccaatctat |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33249804 |
agaccacctagctttttgggtttggttattttctcccagccaactaagtagatcctaaaattggaagaacctttccacaagaaatttattgccaatctat |
33249705 |
T |
|
| Q |
414 |
caatagactcacaagttgattggggcaaccaaaccccttgcatataataatagggaatagaatttaatacagatttaaccaaagtcattcgactagcttt |
513 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
33249704 |
caatagactcacaagttgattggggcaaccaagccacttgcatataataatagggaatagaatttaatacagatttaaccaaagtcattcgaccaacttt |
33249605 |
T |
|
| Q |
514 |
gtttaacaggtgatg |
528 |
Q |
| |
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||| ||||||||||| |
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| T |
33249604 |
gttcaacaggtgatg |
33249590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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