View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10783_23 (Length: 310)
Name: NF10783_23
Description: NF10783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10783_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 65 - 300
Target Start/End: Original strand, 52445884 - 52446111
Alignment:
| Q |
65 |
cgaacctcatgatatgagtttgaaccgtgacacgtatgatgatgttgatgtttgatttactcttcatgacttcatgtgttgttgtataatgctttggttg |
164 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
52445884 |
cgaacctcatgatatgagtttgaaccctgacacgtatgatgatgttgatgtttgatttactcttc--------atgtgttgttgtataatgctttggtcg |
52445975 |
T |
|
| Q |
165 |
agttgatgctctgttcacaatcataatgtatagttatgttgatgttcattattttattattggtgtttatttacatctttctattgtttcaatttatgga |
264 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
52445976 |
agttgatactctgttcacaatcataatgtatagttgtgttgatgttcattattttattattggcgtttatttacatctttctattgtttcaatttatgga |
52446075 |
T |
|
| Q |
265 |
tgattcacaatttcaatcgcaatgtacgtgtctctg |
300 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
52446076 |
tgattcacaatttcaatcacaatgtatgtgtctctg |
52446111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 139 - 281
Target Start/End: Original strand, 52446890 - 52447031
Alignment:
| Q |
139 |
tgtgttgttgtataatgctttggttgagttgatgctctgttcacaatcataatgtatagttatgttgatgttcattattttattattggtgtttatttac |
238 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| | ||||||| |||||||| |||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
52446890 |
tgtgttgttgtataatgcttcaattgagttgatgctctatccacaatcgtaatgtatggttatgttgatgttcattgttctattattggtgtttatttac |
52446989 |
T |
|
| Q |
239 |
atctttctattgtttcaatttatggatgattcacaatttcaat |
281 |
Q |
| |
|
| ||| |||||||| |||||| |||||||| ||||||||||| |
|
|
| T |
52446990 |
acgtttttattgttttaatttagggatgatt-acaatttcaat |
52447031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University