View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10783_3 (Length: 507)
Name: NF10783_3
Description: NF10783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10783_3 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 31265144 - 31264914
Alignment:
| Q |
14 |
gaatggctgcaaaattcaaatctcaaagacactttggaaaaacctgacgcgtcaaggatgaagatcccctaaacgacaagttgtgaaaagccagaagttg |
113 |
Q |
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| T |
31265144 |
gaatggctgcaaaattcaaatctcaaagacactttggaaaaacctgacgcgtcaaggatgaagatcccctaaacgacaagttgtgaaaagccagaagttg |
31265045 |
T |
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| Q |
114 |
ttttctgtttcagtggtgcagagtgtagactttaatcttctgattcctaatttgttttgcattatagtgggttgaaaaatgtttatttgttctttaacaa |
213 |
Q |
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| T |
31265044 |
ttttctgtttcagtggtgcagagtgtagactttattcttctgattcctcatttgttttgcattatagtgggttgaaaaatgtttatttcttctttaacaa |
31264945 |
T |
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| Q |
214 |
caactagcatatctttatttccgttaagtta |
244 |
Q |
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| T |
31264944 |
caactagcatatctttatttccgttaagtta |
31264914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 144 - 234
Target Start/End: Complemental strand, 31253167 - 31253077
Alignment:
| Q |
144 |
tttaatcttctgattcctaatttgttttgcattatagtgggttgaaaaatgtttatttgttctttaacaacaactagcatatctttatttc |
234 |
Q |
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| T |
31253167 |
tttaatcttcggattcctcatttgttttgcattatagtgggttgaaaaaggtttatttgttctttaagcacatctgtcatatctttatttc |
31253077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 249 - 325
Target Start/End: Complemental strand, 31253008 - 31252933
Alignment:
| Q |
249 |
accaatattacattgcttctgaatttttataggagatcaaaaccagaacaaattttttccttaagtaactttaagaa |
325 |
Q |
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| T |
31253008 |
accaatgttaaattgcttctgaatttt-ataggaaatcaaaaccagaacaagttttttccttaagtaactttaagaa |
31252933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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