View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10783_4 (Length: 493)
Name: NF10783_4
Description: NF10783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10783_4 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 47486783 - 47487260
Alignment:
| Q |
1 |
gcatgaagtttcatttgcaatataaaatttagaacattaaagaaattcttggtccgtagttatttgtatgcatgtacctttccaaccaatatttcattac |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47486783 |
gcatgaagtttcatttgcaatataaaatttagaacattaaagaaattcttggtacgtagttatttgtatgcatgtacctttccaaccaatatttcattac |
47486882 |
T |
|
| Q |
101 |
caccatcgactccataaacatcagcagtatcaaataaagtgatgcctttactaaatgcatacttaattatggaaataccatcttgctcaggaagaagatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47486883 |
caccatcgactccataaacatcagcagtatcaaataaagtgatgcctttactaaatgcatacttaattatggaaataccatcttgctcaggaagaagatc |
47486982 |
T |
|
| Q |
201 |
actgtaggctccactgagtcccatacacccaaatcccatttttgaaacctgaaagccttgggttccaagtgtaacatgaggaattagctcggtttgcgtt |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47486983 |
actgtaggctccaccgagtcccatacacccaaatcccatttttgaaacctgaaagccttgggttccaagtgtaacatgaggaattagctcggtttgcatt |
47487082 |
T |
|
| Q |
301 |
gttgccattttggttaatgatgaatgtttgaatgttttctatttttatgacttcaccatagaattttccatgattgattatattatatttttgaccaagt |
400 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47487083 |
gttgccattttggttaatgatgaatg---------------tttttatgacttcaccatagaatttttcatgattgattatattatatttttgaccaagt |
47487167 |
T |
|
| Q |
401 |
tgatgatgaatgattagattttcaga-----attgcatgtcttagtttccatttgaagccttaatatattatatacggatatgatattattcg |
488 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47487168 |
tgatgatgaatgattagaatttcagaattatattgcatgtcttagtttccatttgaagccttaatatattatatacggatatgatatgattcg |
47487260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 75 - 271
Target Start/End: Original strand, 47474191 - 47474387
Alignment:
| Q |
75 |
tacctttccaaccaatatttcattaccaccatcgactccataaacatcagcagtatcaaataaagtgatgcctttactaaatgcatacttaattatggaa |
174 |
Q |
| |
|
||||||||||| || ||||||||| ||||| ||||||| | ||||||||||||||| ||||| | ||||||||| || ||||| ||||||| |||| |
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| T |
47474191 |
tacctttccaagtaaaatttcattagcaccactacctccatagatatcagcagtatcaaaaaaagtaacgcctttactgaaagcatagttaattacggaa |
47474290 |
T |
|
| Q |
175 |
ataccatcttgctcaggaagaagatcactgtaggctccactgagtcccatacacccaaatcccatttttgaaacctgaaagccttgggttccaagtg |
271 |
Q |
| |
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||||||||||| ||||||||| ||||| |||| |||||| |||||||||||||||| || |||| |||||||||||||||||||||||||||||||| |
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| T |
47474291 |
ataccatcttgttcaggaagaggatcattgtaagctccagtgagtcccatacacccgaaacccaattttgaaacctgaaagccttgggttccaagtg |
47474387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 75 - 230
Target Start/End: Original strand, 47477683 - 47477838
Alignment:
| Q |
75 |
tacctttccaaccaatatttcattaccaccatcgactccataaacatcagcagtatcaaataaagtgatgcctttactaaatgcatacttaattatggaa |
174 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||| ||||||||||||||| || ||||| ||||||||||||||||| ||||||| ||||||| |||| |
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|
| T |
47477683 |
tacctttccaaccaaaatttcattcccaccatcgagtccataaacatcagcggtgtcaaaaaaagtgatgcctttactgaatgcatgattaattacggaa |
47477782 |
T |
|
| Q |
175 |
ataccatcttgctcaggaagaagatcactgtaggctccactgagtcccatacaccc |
230 |
Q |
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|| ||| || ||||||||| ||||| |||| |||||||||| |||||||||| |
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| T |
47477783 |
atgccaatttcttcaggaagaggatcattgtatcctccactgagggccatacaccc |
47477838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 47477981 - 47478030
Alignment:
| Q |
247 |
acctgaaagccttgggttccaagtgtaacatgaggaattagctcggtttg |
296 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||| || ||||| |
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| T |
47477981 |
acctgaaagccttgggttccaagtgagacatgaggaattagttcagtttg |
47478030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 370
Target Start/End: Complemental strand, 37109875 - 37109846
Alignment:
| Q |
341 |
atttttatgacttcaccatagaattttcca |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
37109875 |
atttttatgacttcaccatagaattttcca |
37109846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 369
Target Start/End: Original strand, 17842744 - 17842772
Alignment:
| Q |
341 |
atttttatgacttcaccatagaattttcc |
369 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
17842744 |
atttttatgacttcaccatagaattttcc |
17842772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 370
Target Start/End: Complemental strand, 37203086 - 37203057
Alignment:
| Q |
341 |
atttttatgacttcaccatagaattttcca |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
37203086 |
atttttatgacttcaccatagaattttcca |
37203057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 369
Target Start/End: Original strand, 408726 - 408754
Alignment:
| Q |
341 |
atttttatgacttcaccatagaattttcc |
369 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
408726 |
atttttatgacttcaccatagaattttcc |
408754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 369
Target Start/End: Original strand, 17158180 - 17158208
Alignment:
| Q |
341 |
atttttatgacttcaccatagaattttcc |
369 |
Q |
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|
||||||||||||||||||||||||||||| |
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| T |
17158180 |
atttttatgacttcaccatagaattttcc |
17158208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 369
Target Start/End: Complemental strand, 18422675 - 18422647
Alignment:
| Q |
341 |
atttttatgacttcaccatagaattttcc |
369 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
18422675 |
atttttatgacttcaccatagaattttcc |
18422647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 372
Target Start/End: Complemental strand, 28769678 - 28769646
Alignment:
| Q |
340 |
tatttttatgacttcaccatagaattttccatg |
372 |
Q |
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|||||||||||||||||||||||||||| |||| |
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|
| T |
28769678 |
tatttttatgacttcaccatagaatttttcatg |
28769646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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