View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10783_5 (Length: 485)
Name: NF10783_5
Description: NF10783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10783_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Complemental strand, 6315480 - 6315046
Alignment:
| Q |
18 |
tcagttatagccaaaaactatgagccattgtattaacaaccaatttgcagtcagtcacaattgtccccgtactatttgctcactccataaccctccataa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315480 |
tcagttatagccaaaaactatgagccattgtattaacaaccaatttgcagtcagtcacaattgtccccgtactatttgctcactccataaccctccataa |
6315381 |
T |
|
| Q |
118 |
agccatcacttcatcttcgtttgtaaagggatcc-atctgcccaacaagtctccgttgctactaatccacctgttgccatatgacaagtacccctgttgt |
216 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315380 |
agccgtcacttcatcttcatttgtaaagggatcccatctgcccaacaagtctccgttgctactaatccacctgttgccatatgacaagtacccctgttgt |
6315281 |
T |
|
| Q |
217 |
ggttttttccatctactatatgcctcgtgttaatctccaaattctaagtattttgctgctttttcttttgccatttcaaaacaacagggaactaaatagc |
316 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315280 |
ggtcttttccatctactatatgcctcgtgttaatctccaaattctaagtattttgctgctttttcttttgccatttcaaaacaacagggaactaaatagc |
6315181 |
T |
|
| Q |
317 |
ttgttggattgttgccaggcatattccaaagctgcttacttcttctctctcgaccatatattccacaacaccatagttaaaccattcataatcattgttg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315180 |
ttgttggattgttgccaggcatattccaaagctgcttacttcttctctt----ccatatattccacaacaccatagttaaaccattcataatcattgttg |
6315085 |
T |
|
| Q |
417 |
tgcagttgttgatgacagtaaaaataaactctgcacatg |
455 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6315084 |
tgcagttgttgatgacagtaaaaataaattctgcacatg |
6315046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 397 - 444
Target Start/End: Complemental strand, 6318236 - 6318189
Alignment:
| Q |
397 |
accattcataatcattgttgtgcagttgttgatgacagtaaaaataaa |
444 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
6318236 |
accattcataatccttgttgtgcagctgttgatgacagtaaaattaaa |
6318189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University