View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10783_9 (Length: 469)
Name: NF10783_9
Description: NF10783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10783_9 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 31 - 461
Target Start/End: Original strand, 11085961 - 11086392
Alignment:
| Q |
31 |
aatgatatttgaacaatgataattttctgacaacactcttttt--ctttcattttcctttaggagcaaaagcaattgagatagagttttctaaaagttgt |
128 |
Q |
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| T |
11085961 |
aatgatatttgaacaacgataactttcggacaacactctttttttctttcattttcctataagagcaaaagcaaatgagatagagtttcctaaaagttgt |
11086060 |
T |
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| Q |
129 |
caaatttttattgtttaaatatcattattttaaaatattatttccctacactacataattgaaggaaaatacttcaattatgtaatgtaggggaatagta |
228 |
Q |
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| T |
11086061 |
caaatttttattgttcaaatatcattattttaaaatattatttccctacactacataattgaaggaaaatacttcaattatgtagtgtaggggaatagta |
11086160 |
T |
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| Q |
229 |
ttttaaaatacttccttcnnnnnnntaattgaaggaaaatacttgattggtcacatgcatttgagtatactacttgaacacaaacacttaagaaaaggtt |
328 |
Q |
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| T |
11086161 |
ttttagaatacttctttcaaaaaaataattgaaggaaaatacttgattggtcacatgcatttgagtacactacttgaacacaaacacttaagaaaaggtt |
11086260 |
T |
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| Q |
329 |
gaaaggaaaatgaattaaataatatatattttcaaaataattatttatatgtatttttagtgtgttcaatagtttgtgatcaagcaagatttcctcgtag |
428 |
Q |
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| T |
11086261 |
gaaagaaaaatgaattaaataatatatatttttaaaataattatttgtatgtatttttagtgtgttcaattgtttgtgatcaagcaagatttcctcgtag |
11086360 |
T |
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| Q |
429 |
ttgaatgaatgtcccaaacccaaacaactgaac |
461 |
Q |
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| T |
11086361 |
ttgaatgagtg-cccaaacccatacgactgaac |
11086392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 11086170 - 11086086
Alignment:
| Q |
154 |
tattttaaaatattatttccctacactacataattgaaggaaaatacttcaattatgtaatgtaggggaatagtattttaaaata |
238 |
Q |
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| T |
11086170 |
tattctaaaatactattcccctacactacataattgaagtattttccttcaattatgtagtgtagggaaataatattttaaaata |
11086086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 386
Target Start/End: Original strand, 6953540 - 6953592
Alignment:
| Q |
335 |
aaaatgaattaaataatatatattttcaaaataatt-atttatatgtattttt |
386 |
Q |
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| T |
6953540 |
aaaatgaattaaataatatccatttttaaaataattaatttatatgtattttt |
6953592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 371
Target Start/End: Complemental strand, 36198856 - 36198825
Alignment:
| Q |
340 |
gaattaaataatatatattttcaaaataatta |
371 |
Q |
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| T |
36198856 |
gaattaaataatatatattttcaaaataatta |
36198825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 387
Target Start/End: Complemental strand, 15743553 - 15743505
Alignment:
| Q |
339 |
tgaattaaataatatatattttcaaaataattatttatatgtattttta |
387 |
Q |
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||||||||||||||| |||||||||||||||| | |||| |||||||| |
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| T |
15743553 |
tgaattaaataatatgcattttcaaaataattaataatatttattttta |
15743505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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