View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10784_1 (Length: 650)
Name: NF10784_1
Description: NF10784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10784_1 |
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Alignment Details
Target: chr8 (Bit Score: 553; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 8 - 621
Target Start/End: Original strand, 21179035 - 21179648
Alignment:
| Q |
8 |
atggacatcatctaatctcatcacatatctacattctaatccaaacaatgtagtacaatactattacattcatacaacttgattctatctcaataccact |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21179035 |
atggatatcatctaatctcatcacatatctacattctaatccaaacaatgtagtacaatactattacattcatacaacttgattctatctcaataccact |
21179134 |
T |
|
| Q |
108 |
aatcctttcaattagcgattggaataaactcattctttattaactcaatttgacgactaaaacacccaagaacacttggatgggatgataagatatttct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
21179135 |
aatcctttcaattagcgattggaataaactcattctttcttaactcaatttgacgactaaaacactcaagagcacttggatgggatgataagatatttct |
21179234 |
T |
|
| Q |
208 |
tctaacttaaccagaggtcatgggttctaatccatccatttaaatgtagcagttgccttaaatctcttgaaggagagctttgtcattcactacctgactt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21179235 |
tctaacttaaccagaggtcatgggttctaatccatccctttaaatgtagcagttgccttaaatctcttgaaggagagctttgtcatccactacctgactt |
21179334 |
T |
|
| Q |
308 |
gagtgattagtctatgcagttgtgtggagatcatatccgattcacacnnnnnnntcgatgactaaaacacaacattggaagataataaaagaaagaaaaa |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21179335 |
gagtgattagtctatgcagttgtgtggagatcatatccgattcacacaaaaaaatcgatgactaaaacacaacattggaagataaaaaaagaaagaaaaa |
21179434 |
T |
|
| Q |
408 |
tatagtagcatggacataacaagtttttcaaattactcaaacaagtaagttattttaattttcaaaactagtgaagtcactctaaactcatcttgcttca |
507 |
Q |
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| T |
21179435 |
tatagtagcatggacataacaagtttttcaaattactcaaacaagtaagttattttaattctcaaaactagtgaagtcactctaaactcatcttgcttca |
21179534 |
T |
|
| Q |
508 |
actagtgaatttgtgacaacattcacagaaacgttttcttctatgcttctagaaagtcttgaattttcaatacctctcacattttgaaatgccggtggct |
607 |
Q |
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| T |
21179535 |
actagtgaatttgtgacaacattcacagaaacgttttcttctatgcttctagagagtcttgaattttcaatacctctcacattttgaaatgccggtggct |
21179634 |
T |
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| Q |
608 |
ttggactaggaagg |
621 |
Q |
| |
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|||||||| ||||| |
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| T |
21179635 |
ttggactaagaagg |
21179648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 473 - 621
Target Start/End: Complemental strand, 23190528 - 23190379
Alignment:
| Q |
473 |
aactagtgaagtcactctaaa-ctcatcttgcttcaactagtgaatttgtgacaacattcacagaaacgttttcttctatgcttctagaaagtcttgaat |
571 |
Q |
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|||||| |||||||||||||| ||||||||||||||| ||||||| ||||| |||||| ||||| |||| ||||||||||| | || |||||||||| |
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| T |
23190528 |
aactagcgaagtcactctaaaactcatcttgcttcaatgagtgaatctgtgatgccattcagagaaatgtttccttctatgctttttgagagtcttgaat |
23190429 |
T |
|
| Q |
572 |
tttcaatacctctcacattttgaaatgccggtggctttggactaggaagg |
621 |
Q |
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||||||||||||||| ||||||||||| |||||||||||| | |||||| |
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| T |
23190428 |
attcaatacctctcacgttttgaaatgctggtggctttggaatcggaagg |
23190379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 483 - 612
Target Start/End: Complemental strand, 23183142 - 23183012
Alignment:
| Q |
483 |
gtcactctaaa-ctcatcttgcttcaactagtgaatttgtgacaacattcacagaaacgttttcttctatgcttctagaaagtcttgaattttcaatacc |
581 |
Q |
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||||||||||| ||||||||||||||| | ||||| ||||| |||||||||||| |||| ||||||||||| | || ||||||||| ||| ||| || |
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| T |
23183142 |
gtcactctaaaactcatcttgcttcaatgactgaatctgtgatgccattcacagaaatgtttccttctatgctttttgagagtcttgaacttttaatgcc |
23183043 |
T |
|
| Q |
582 |
tctcacattttgaaatgccggtggctttgga |
612 |
Q |
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|||||||||||||||||| |||||||||||| |
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| T |
23183042 |
tctcacattttgaaatgctggtggctttgga |
23183012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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