View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10784_2 (Length: 443)
Name: NF10784_2
Description: NF10784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10784_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 5 - 367
Target Start/End: Original strand, 229476 - 229824
Alignment:
| Q |
5 |
agaagaaaaggaagcttagtttataaataaacatgttttttaattaggaaaggcaacatatacatttacgaaccgaaatatttgatctcgaaataaagct |
104 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
229476 |
agaagaaaaggaagcttagtttatacataaacatgttttttaattaggaaa-------------tttacgaaccgaaatatttgatctcgaaataaagct |
229562 |
T |
|
| Q |
105 |
ttgatatgagtcaaactaaagggttgtgtatgatatggggatcaaccttattagtattgaaaataccaagacctttacaaagagatgcacgcatcgcatc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
229563 |
ttgatatgagtcaaactaaagggttgtgtatgatatggggatcaaccttattagtattgaaaataccaagacctttacaaagagatgcacgcatcgcatc |
229662 |
T |
|
| Q |
205 |
atgttatataccgatttataaataatgagttagatctaatataaaaaatattaatatgacatggtaaacgttgattttgtaaggaatgtgttaagtccaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
229663 |
atgttatataccgatttataaataatgagttagatctaatataaaaaatattaatatgacatggtaaacgttgattttgtaagg-atatgttaagtccaa |
229761 |
T |
|
| Q |
305 |
tattaaaagctaataataaatagtgatcaagtagagagaagtgaacttacatcatcggtaccg |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
229762 |
tattaaaagctaataataaatagtgatcaagtagagagaagtgaacttacatcatcggtaccg |
229824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University