View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10784_3 (Length: 394)
Name: NF10784_3
Description: NF10784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10784_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 48801521 - 48801125
Alignment:
| Q |
1 |
tcaggttcataatataaacccaaatctatatctatattatttacattttagaatttaccaagacttgaacatagtactggtannnnnnnnn---atttca |
97 |
Q |
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| T |
48801521 |
tcaggttcataatataaacccaaatctatatctatattatttacattttagaatttaccaagacttgaacatagtactagtattttttttttttatttca |
48801422 |
T |
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| Q |
98 |
agtaaaattccataaagtaacacattttggtcggtagaaataattaaactatagatgctttgtagatgatattatctaatcaaatttgttataattgcca |
197 |
Q |
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| T |
48801421 |
agtaaaattccataaagtaacacattttggtcggtagaaataattaaactatagatgctttgtagatgatatcatctaatcaaatttgttataattgcca |
48801322 |
T |
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| Q |
198 |
tcttgacatgttgagagtactacgttggatagtaatatgatctgaacgatgattatagttgaaggcaaccgtcattccatgtagtagtttttgaggttga |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48801321 |
tcttgacatgttgagagtactacgttggatagtaatatgatctgaacgatgattatagttgaaggcaaccgtcattccatgtagtagtttttgaggttga |
48801222 |
T |
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| Q |
298 |
acaaagaattataattctgatatggtaaacaaagtatagcctattgcgccatccacatatatctagtagtttatacactccagatgtctagtctctg |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48801221 |
acaaagaattataattctgatatggtaaacaaagtatagcctattgagccatccacatatatctagtagtttatacactccagatgtctagtctctg |
48801125 |
T |
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