View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10784_4 (Length: 361)
Name: NF10784_4
Description: NF10784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10784_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 6 - 361
Target Start/End: Complemental strand, 38533469 - 38533114
Alignment:
| Q |
6 |
aacgagcagaacctgtgccattaaacggtgctatctgaaaatgccaaagccttccaacacctttaaccaaattcttcttacaaagaaactcatcagcata |
105 |
Q |
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| T |
38533469 |
aacgaggagaatcagtgccattaaacggtgctatctgaaaatgccaaagccttccaacacctttaaccaaattcttcttacaaagaaactcatcagcata |
38533370 |
T |
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| Q |
106 |
aagtttctcaaccctacgatccacatcatgcaaaaacacatgcgtcacaccagatcccttcctattcctcgccataacagcagctgaaaacaccgccgcc |
205 |
Q |
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| T |
38533369 |
aagtttctcaaccctacgatccacatcatgcaaaaacacatgcgtcacaccagatcccttcctattcctcgccataacagcagctgaaaacaccgccgcc |
38533270 |
T |
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| Q |
206 |
attctccccggcgcctccgcgaaataccctttcggcgcatcgatcataataagatcccactccgtatcgtaaacctcatcgggtaaattctcaagcgcaa |
305 |
Q |
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| T |
38533269 |
attctccccggcgcctccgcgaaataccctttcggcgcatcgatcataataagatcccactccgtatcgtaaacctcatcgggtaaattctcaagcgcaa |
38533170 |
T |
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| Q |
306 |
gcttgcatgctttgtttccacgtagaaaagctttagaaggtgaacacataggttcc |
361 |
Q |
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| T |
38533169 |
gcttgcatgctttgtttccacgtagaaaagctttagaaggtgaacacataggttcc |
38533114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 47 - 285
Target Start/End: Original strand, 34715034 - 34715272
Alignment:
| Q |
47 |
tgccaaagccttccaacacctttaaccaaattcttcttacaaagaaactcatcagcataaagtttctcaaccctacgatccacatcatgcaaaaacacat |
146 |
Q |
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| T |
34715034 |
tgccaaagcctaccaacacctttcaccaaattcttcctacaaagaaattcttcggcataaactttctcaaccttccgatccacatcatgcaaaaacacgt |
34715133 |
T |
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| Q |
147 |
gcgtcacaccagatcccttcctattcctcgccataacagcagctgaaaacaccgccgccattctccccggcgcctccgcgaaataccctttcggcgcatc |
246 |
Q |
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| T |
34715134 |
gcgtcacaccggaaccttttctatttctcgccatcaccgtcattgaaaatatcgccgccattctccccggcgcctccgcgaaataacctctcggcgcatc |
34715233 |
T |
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| Q |
247 |
gatcataataagatcccactccgtatcgtaaacctcatc |
285 |
Q |
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| T |
34715234 |
gatcattatcaaatcccactccgtttcgtaaatctcatc |
34715272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 10189323 - 10189258
Alignment:
| Q |
91 |
aaactcatcagcataaagtttctcaaccctacgatccacatcatgcaaaaacacatgcgtcacacc |
156 |
Q |
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| T |
10189323 |
aaactccttagcataaagtttctcaacctccctatccacatcatgaagaaacacatgcgtcacacc |
10189258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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