View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10784_6 (Length: 318)
Name: NF10784_6
Description: NF10784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10784_6 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 28 - 309
Target Start/End: Complemental strand, 17855897 - 17855616
Alignment:
| Q |
28 |
gcgggcgcgtcaagcttatctgtatctgtatgtctcgcctgaaggccctggacttggctgtttgactctggtttaatagataagggtggcctcatgcacc |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17855897 |
gcgggcgcgtcaagcttatctgtatctgtatgtctcgcctgaaggccctggacttggctgtttgactctggtttaatagataagggtggcctcatgcacc |
17855798 |
T |
|
| Q |
128 |
tttggtagcgcccttgctttaggcgcttgtccttatcctaagacaagcgtgattattcttgatatggcggtccacaaccccccaagcacgagtcctggtt |
227 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17855797 |
tttggtagcgcccttactttaggcgcttgtccttatcctaagacaagcgtgattattcttgatatggcggtccacaaccccccaagcacgagtcctggtt |
17855698 |
T |
|
| Q |
228 |
aagggcgaagtggttgaacgagatatgatggtccagtaggatttcagcattgccgtctatattatggatgatatatattctt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17855697 |
aagggcgaagtggttgaacgagatatgatggtccagtaggatttcagcattgccgtctatattatggatgatatatattctt |
17855616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 43116493 - 43116449
Alignment:
| Q |
192 |
tggcggtccacaaccccccaagcacgagtcctggttaagggcgaa |
236 |
Q |
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| T |
43116493 |
tggcggtccacaaccccctaaacatgagtcctggttaagggcgaa |
43116449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 28 - 207
Target Start/End: Complemental strand, 34647283 - 34647103
Alignment:
| Q |
28 |
gcgggcgcgtcaagcttatctgtatctgtatgtctcgcctgaaggccctggacttggctgtttgactctggtttaatagataagggtggcctcatgcacc |
127 |
Q |
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|||||||||||||||||||||||||| ||||||| ||| ||||||||||| | ||||||||||| | |||||| ||||||||| |||||| ||| || |
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| T |
34647283 |
gcgggcgcgtcaagcttatctgtatccatatgtcttccctaaaggccctggattgagctgtttgactttagtttaagagataagggcggcctcgtgcccc |
34647184 |
T |
|
| Q |
128 |
tttggtagcgcccttgcttta-ggcgcttgtccttatcctaagacaagcgtgattattcttgatatggcggtccacaaccc |
207 |
Q |
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||||| |||||||| |||| | ||| ||||||||||||||| || |||||||||||||||| |||||| ||||| |
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| T |
34647183 |
tttggcggcgcccttattttatgataagtgtgattatcctaagacaagtgtaattattcttgatatggaggtccataaccc |
34647103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 47361851 - 47361897
Alignment:
| Q |
196 |
ggtccacaaccccccaagcacgagtcctggttaagggcgaagtggtt |
242 |
Q |
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| T |
47361851 |
ggtccacagccctccaagcacgagtcctggttaagggcgaagtggtt |
47361897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 11919616 - 11919571
Alignment:
| Q |
197 |
gtccacaaccccccaagcacgagtcctggttaagggcgaagtggtt |
242 |
Q |
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| T |
11919616 |
gtccacaaccccccaagcatgagtcctgaataagggcaaagtggtt |
11919571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 33929593 - 33929455
Alignment:
| Q |
29 |
cgggcgcgtcaagcttatctgtatctgtatgtctcgcctgaaggccctggacttggctgtttgactctggtttaatagataagggtggcctcatgcacct |
128 |
Q |
| |
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||||| |||||||||||| |||| | |||||||||| |||||||| |||| || || ||| |||| ||||||| ||||||||| ||| | ||||||| |
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| T |
33929593 |
cgggcacgtcaagcttatgtgtaaccttatgtctcgcttgaaggccatggatttagcagttcgactttggtttacgagataagggcagccacttgcacct |
33929494 |
T |
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| Q |
129 |
ttggtagcgcccttgctttaggcgcttgtccttatccta |
167 |
Q |
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||||| | || ||| |||||||| ||||| ||||||||| |
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| T |
33929493 |
ttggttgtgctcttactttaggcacttgttcttatccta |
33929455 |
T |
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