View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10785_1 (Length: 629)
Name: NF10785_1
Description: NF10785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10785_1 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 8 - 453
Target Start/End: Original strand, 48372683 - 48373128
Alignment:
| Q |
8 |
tagcaaagggatcaagaagaagcacnnnnnnntgaaaggtcgcttttttagattggtttgcggatgaaacatgttttagtcacttatgtgattttgatct |
107 |
Q |
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| T |
48372683 |
tagccaagggatcaagaagaagcacagaaaaatgaaaggtcgcttttttagattggtttgcggatgaaacatgttttagtcacttatgtgattttgatct |
48372782 |
T |
|
| Q |
108 |
ctgtctttgaaattgttactatccaatnnnnnnnntcaataaactatacacacattaataattgatctctgtctttgagtctatttttgttgtgtttaac |
207 |
Q |
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| T |
48372783 |
ctgtctttgaaattgttactatccaataaaagaaatcaataaactatacacacattaataattgatctctgtctttgagtctatttttgttgtgtttaac |
48372882 |
T |
|
| Q |
208 |
attttttccctcctgtagttctgatccgttcagcataaaaacttcaaatgtaatgtgttttgcaatcaaacaacttgnnnnnnncacgaccgacggtaaa |
307 |
Q |
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| T |
48372883 |
attttttccctcctgtagttctgatccgttcagcataaaaacttcaaatgtaatgtgttttgcaatcaaacaacttgaaaaaaacacgaccgacggtaaa |
48372982 |
T |
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| Q |
308 |
tgaatagttcaaattatttgaatctttcatatttcatttgatgtgttgcaaattgtgcaattaaaaaacaagtttgacagactagtttgcataattttgt |
407 |
Q |
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| T |
48372983 |
tgaatagttcaaattatttgaatctttcatatttcatttgatgtgttgcaaattgtgcaattaaaaaacaagtttgacagactagtttgcataattttgt |
48373082 |
T |
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| Q |
408 |
tttggcatagaattaaccaaatatatgcctcttactatagttttta |
453 |
Q |
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| T |
48373083 |
tttgggatagaattaaccaaatatatgcctcttactatagttttta |
48373128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 517 - 629
Target Start/End: Original strand, 48373199 - 48373311
Alignment:
| Q |
517 |
tgagcataatagatactcgttcataacaagactatctcataaattttgaagttattctcagtctctcactttacatcggtcaaaatacacttatcaaatt |
616 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48373199 |
tgagcacaatagatactcgttcataacaagactatctcataaattttgaggttattcccagtcgctcactttacatcggtcaaaatacacttatcaaatt |
48373298 |
T |
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| Q |
617 |
ttcaaataaaata |
629 |
Q |
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| T |
48373299 |
ttcaaataaaata |
48373311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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