View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10785_2 (Length: 437)

Name: NF10785_2
Description: NF10785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10785_2
NF10785_2
[»] chr7 (9 HSPs)
chr7 (99-424)||(21813634-21813969)
chr7 (184-320)||(6530511-6530647)
chr7 (200-379)||(11828572-11828747)
chr7 (222-397)||(46963797-46963978)
chr7 (222-396)||(44338201-44338376)
chr7 (264-323)||(24487104-24487162)
chr7 (281-342)||(44338386-44338446)
chr7 (279-338)||(15623111-15623169)
chr7 (279-324)||(15623032-15623076)
[»] chr5 (5 HSPs)
chr5 (159-395)||(9511662-9511898)
chr5 (205-395)||(11335371-11335558)
chr5 (222-285)||(24136721-24136784)
chr5 (279-342)||(24137051-24137113)
chr5 (279-338)||(24136896-24136955)
[»] chr4 (10 HSPs)
chr4 (160-351)||(54147505-54147697)
chr4 (278-398)||(54147686-54147805)
chr4 (263-343)||(24225463-24225547)
chr4 (279-372)||(42265401-42265492)
chr4 (222-351)||(16870563-16870700)
chr4 (286-342)||(16870760-16870815)
chr4 (263-323)||(54147640-54147700)
chr4 (274-322)||(54147713-54147761)
chr4 (279-321)||(16870659-16870701)
chr4 (306-342)||(54147869-54147905)
[»] chr2 (13 HSPs)
chr2 (162-351)||(1173605-1173798)
chr2 (278-397)||(38584081-38584200)
chr2 (263-325)||(32290585-32290647)
chr2 (278-342)||(1173491-1173554)
chr2 (222-349)||(38584195-38584326)
chr2 (278-351)||(1173574-1173647)
chr2 (279-373)||(38584136-38584234)
chr2 (222-351)||(8986125-8986262)
chr2 (279-342)||(1173305-1173367)
chr2 (278-328)||(1173566-1173616)
chr2 (279-321)||(8986221-8986263)
chr2 (278-351)||(32290565-32290642)
chr2 (376-424)||(38584019-38584067)
[»] chr1 (6 HSPs)
chr1 (278-342)||(15630044-15630108)
chr1 (225-374)||(2075898-2076050)
chr1 (239-368)||(19825091-19825223)
chr1 (225-374)||(2072368-2072520)
chr1 (310-396)||(15630022-15630107)
chr1 (279-342)||(15629952-15630014)
[»] chr3 (6 HSPs)
chr3 (222-351)||(50295474-50295603)
chr3 (279-393)||(50295562-50295677)
chr3 (279-342)||(42530741-42530803)
chr3 (281-342)||(46691973-46692034)
chr3 (279-342)||(46692067-46692129)
chr3 (362-396)||(46692044-46692078)
[»] chr6 (7 HSPs)
chr6 (199-325)||(21861942-21862071)
chr6 (234-342)||(10741458-10741566)
chr6 (279-342)||(21862149-21862211)
chr6 (279-342)||(21862246-21862308)
chr6 (267-325)||(13167356-13167414)
chr6 (200-275)||(28063770-28063844)
chr6 (273-373)||(13097871-13097970)
[»] chr8 (4 HSPs)
chr8 (222-396)||(20241878-20242053)
chr8 (222-396)||(20251014-20251189)
chr8 (281-342)||(20242063-20242123)
chr8 (281-342)||(20250944-20251004)


Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 99 - 424
Target Start/End: Original strand, 21813634 - 21813969
Alignment:
Q  99 ccggtctccttattgttctttgatttgtttcgatttgcagtttatgttggtctagtttagtttgg----------ttcgtcaatttgtctttgcctggtt 188  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||          |||||||||||||||||| ||||||    
T  21813634 ccggtctccttattgttttttgatttgtttcggtttgcagtttatgttggtctagtttagtttggttcgtattggttcgtcaatttgtctttgtctggtt 21813733  T
Q  189 cgtttgattcagttcggtttgatttggattcggttggttcaatttgtttggttgttaggcgagtcaagatattcctcacaattggtttatttgtttggtg 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21813734 cgtttgattcagttcggtttgatttggattcggttggttcaatttgtttggttgttaggcgagtcaagatattcctcacaattggtttatttgtttggtg 21813833  T
Q  289 agtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggttgcttggtgaaataagtacccacaatttggttttttctctccctttt 388  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21813834 agtcaagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggttgcttggtgaaataagtacccacaatttggttttttctccccctttt 21813933  T
Q  389 gattcttctgtgtgattgcattacaattctccccct 424  Q
    ||||||||||||||||| |||| || ||||| ||||    
T  21813934 gattcttctgtgtgattccattgcacttctctccct 21813969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 184 - 320
Target Start/End: Original strand, 6530511 - 6530647
Alignment:
Q  184 tggttcgtttgattcagttcggtttgatttggattcggttggttcaatttgtttggttgttaggcgagtcaagatattcctcacaattggtttatttgtt 283  Q
    |||||| |||| ||| |||| |||||||||||||||| || |||||||||||||| ||||| || ||||||||||| |  ||||||||||||| | ||||    
T  6530511 tggttcatttggttccgttcagtttgatttggattcgttttgttcaatttgtttgattgttgggtgagtcaagatagtattcacaattggtttgtctgtt 6530610  T
Q  284 tggtgagtcaagtgctcacactttggttgtttggtga 320  Q
    ||||||||||| || ||||| ||||||||||||||||    
T  6530611 tggtgagtcaaatgttcacaatttggttgtttggtga 6530647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 200 - 379
Target Start/End: Complemental strand, 11828747 - 11828572
Alignment:
Q  200 gttcggtttgatttggattcggttggttcaatttgtttggttgttaggcgagtcaagatattcctcacaattggtttatttgtttggtgagtcaagtgct 299  Q
    |||| ||||||||||| |||| ||| ||||||||||||| ||||  |  ||| ||||||| | |||||||    ||| || |||||||| ||||||||||    
T  11828747 gttcagtttgatttggtttcgtttgattcaatttgtttgattgtaggatgagacaagatagtgctcacaa----tttgttagtttggtgggtcaagtgct 11828652  T
Q  300 cacactttggttgtttggtgagtcgagtgttcataatttggttgcttggtgaaataagtacccacaatttggttttttct 379  Q
    |||| ||||||||| |||||||||| ||| ||| | |||||||| |||||||  ||||||| ||||||||||||| ||||    
T  11828651 cacaatttggttgtctggtgagtcgggtgctcacattttggttgtttggtgagttaagtactcacaatttggtttcttct 11828572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 222 - 397
Target Start/End: Complemental strand, 46963978 - 46963797
Alignment:
Q  222 ttggttcaatttgtttggttgttaggcgagtcaagatattcctcacaattgg--------tttatttgtttggtgagtcaagtgctcacactttggttgt 313  Q
    ||||||||||||||||||||||| || ||||||| ||| | |||||||||||        ||| ||||||||||| ||||||  |||| | |||| ||||    
T  46963978 ttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgttcatttgtttgtttggtgggtcaagaactcataatttgcttgt 46963879  T
Q  314 ttggtgagtcgagtgttcataatttggttgcttggtgaaataagtacccacaatttggttttttctctcccttttgattcttct 397  Q
    |||||||||||| |  ||| | |||||||| |||||| |  | || | ||||||||||||| ||||| ||||||| ||||||||    
T  46963878 ttggtgagtcgatttctcacactttggttgtttggtg-agcatgtgctcacaatttggtttcttctc-ccctttttattcttct 46963797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 396
Target Start/End: Original strand, 44338201 - 44338376
Alignment:
Q  222 ttggttcaatttgtttggttgttaggcgagtcaagatattcctcacaattggttt----atttgtttggtgagtcaagtgctcacactttggttgtttgg 317  Q
    ||||||||||||||||||||||| || ||||||| ||| | ||||||||| ||||     ||||||||||| ||| ||  |||| | |||| ||||||||    
T  44338201 ttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtc-agcactcataatttgcttgtttgg 44338299  T
Q  318 tgagtcgagtgttcataatttggttgcttggtgaaataagtacccacaatttggttttttctctcccttttgattcttc 396  Q
    ||||||||||  ||| | |||||||| |||||| |    || | ||||||||||||| ||||| |||||||||||||||    
T  44338300 tgagtcgagttctcacattttggttgtttggtg-agcgtgtgctcacaatttggtttcttctc-cccttttgattcttc 44338376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 323
Target Start/End: Complemental strand, 24487162 - 24487104
Alignment:
Q  264 tcacaattggtttatttgtttggtgagtcaagtgctcacactttggttgtttggtgagtc 323  Q
    |||||||| |||| |||||||||||||| ||||| ||||| |||||||||||||||||||    
T  24487162 tcacaatttgtttgtttgtttggtgagt-aagtgttcacaatttggttgtttggtgagtc 24487104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 342
Target Start/End: Original strand, 44338386 - 44338446
Alignment:
Q  281 gtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggtt 342  Q
    |||||||||||| ||| |||||||||||||||||||||||| || ||| ||| |||||||||    
T  44338386 gtttggtgagtcgagttctcacactttggttgtttggtgag-cgtgtgctcacaatttggtt 44338446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 15623169 - 15623111
Alignment:
Q  279 ttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataattt 338  Q
    |||||||||||||| ||| |||||| |||||||||||||||||| ||||| ||| |||||    
T  15623169 ttgtttggtgagtctagttctcaca-tttggttgtttggtgagttgagtgctcacaattt 15623111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 15623076 - 15623032
Alignment:
Q  279 ttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcg 324  Q
    |||||||||||||| ||| |||||| ||||||||||||||||||||    
T  15623076 ttgtttggtgagtctagttctcaca-tttggttgtttggtgagtcg 15623032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 9e-74; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 159 - 395
Target Start/End: Original strand, 9511662 - 9511898
Alignment:
Q  159 tttggttcgtcaatttgtctttgcctggttcgtttgattcagttcggtttgatttggattcggttggttcaatttgtttggttgttaggcgagtcaagat 258  Q
    |||| ||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| |||||    
T  9511662 tttgtttcgtcaatttgtctttgcatggttcgtgtggttcagttcggtttgatttggattcgcttggttgaatttgtttggttgttaggtgagttaagat 9511761  T
Q  259 attcctcacaattggtttatttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggttgcttggtgaaataagt 358  Q
    | ||||||||||| |||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| |||||||||| |||||||  ||| |    
T  9511762 agtcctcacaattcgtttgtttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggttgtttggtgagttaaat 9511861  T
Q  359 acccacaatttggttttttctctcccttttgattctt 395  Q
    || ||||||||| ||| || || ||||||||||||||    
T  9511862 actcacaatttgatttcttatcccccttttgattctt 9511898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 205 - 395
Target Start/End: Complemental strand, 11335558 - 11335371
Alignment:
Q  205 gtttgatttggattcggttggttcaatttgtttggttgttaggcgagtcaagatattcctcacaattggtttatttgtttggtgagtcaagtgctcacac 304  Q
    ||||||||||  |||| ||||||||||||||||||||||| || ||||||||||| | |||||||||||||| ||||||||| | ||||||||||||||     
T  11335558 gtttgatttgatttcgtttggttcaatttgtttggttgtt-ggtgagtcaagatagtgctcacaattggtttgtttgtttggcgggtcaagtgctcacaa 11335460  T
Q  305 tttggttgtttggtgagtcgagtgttcataatttggttgcttggtgaaataagtacccacaatttggttttttctctcccttttgattctt 395  Q
    |||| |||||||||| |   |||  ||| | |||||||| |||||||    | | | ||||||||||||| ||||| ||||||||||||||    
T  11335459 tttgtttgtttggtggg--aagtactcacactttggttgtttggtgagtcgaatgctcacaatttggtttcttctcccccttttgattctt 11335371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 24136721 - 24136784
Alignment:
Q  222 ttggttcaatttgtttggttgttaggcgagtcaagatattcctcacaattggtttatttgtttg 285  Q
    ||||||||||||||||||||||| || ||||||| ||| | |||||||||||||| || |||||    
T  24136721 ttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgttcgtttg 24136784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 24137051 - 24137113
Alignment:
Q  279 ttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggtt 342  Q
    |||||||||||||| ||| |||||| |||||||||||||||||| ||||| ||| |||||||||    
T  24137051 ttgtttggtgagtctagttctcaca-tttggttgtttggtgagttgagtgctcacaatttggtt 24137113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 338
Target Start/End: Original strand, 24136896 - 24136955
Alignment:
Q  279 ttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataattt 338  Q
    |||||||||||| | | | |||||| |||||||||||||||||||||||| ||| |||||    
T  24136896 ttgtttggtgagccgacttctcacaatttggttgtttggtgagtcgagtgctcacaattt 24136955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 9e-43; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 160 - 351
Target Start/End: Original strand, 54147505 - 54147697
Alignment:
Q  160 ttggttcgtcaatttgtctttgcctggttcgtttgattcagttcggtttgatttggattcggttggttcaatttgtttggttgttaggcgagtcaagata 259  Q
    ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||  || |   ||||||||||||||||||| |||||||||||    
T  54147505 ttggttcgtcaatttgtctttgcatggttcgtttggttcagtttggtttgatttggattcattttg---aatttgtttggttgttaggtgagtcaagata 54147601  T
Q  260 ttcctcacaattggtttatttgtttggtgagtcaagtgctcacact----ttggttgtttggtgagtcgagtgttcataatttggttgcttggtga 351  Q
     |||||||||||||||| ||||||||||  |||||||||||||  |    ||| |||||||||| ||| |||| |||||||||| ||| |||||||    
T  54147602 gtcctcacaattggtttgtttgtttggtaggtcaagtgctcactattggattgtttgtttggtgggtcaagtgctcataatttgtttgtttggtga 54147697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 278 - 398
Target Start/End: Original strand, 54147686 - 54147805
Alignment:
Q  278 tttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggttgcttggtgaaataagtacccacaatttggtttttt 377  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||| |||  ||| | |||||||| |||||||  |  || | ||||||||||||| ||    
T  54147686 tttgtttggtgagtcaggtgctcacactttagttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttctt 54147785  T
Q  378 ctctcccttttgattcttctg 398  Q
     || |||||||||||||||||    
T  54147786 -tcccccttttgattcttctg 54147805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 24225463 - 24225547
Alignment:
Q  263 ctcacaattggtttatttgttt----ggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggttg 343  Q
    ||||||||||||||||||||||    ||||| |||||| |||||| |||||||||||||||| ||||||| | | ||||||||||    
T  24225463 ctcacaattggtttatttgttttgttggtgactcaagtactcacaatttggttgtttggtgaatcgagtgcttacaatttggttg 24225547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 372
Target Start/End: Original strand, 42265401 - 42265492
Alignment:
Q  279 ttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggttgcttggtgaaataagtacccacaatttggt 372  Q
    ||||||||||| ||||||||||||  |||||||||||||||||||||||  ||| |||||||||| |||||||   |||| | |||||||||||    
T  42265401 ttgtttggtga-tcaagtgctcactgtttggttgtttggtgagtcgagt-ctcacaatttggttgtttggtgattcaagtgctcacaatttggt 42265492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 351
Target Start/End: Original strand, 16870563 - 16870700
Alignment:
Q  222 ttggttcaatttgtttggttgttaggcgagtcaagatattcctcacaattgg--------tttatttgtttggtgagtcaagtgctcacactttggttgt 313  Q
    ||||||||||||||||||||||| || ||||||| ||| | |||||||||||        ||| ||||||||||| ||||||  |||| | |||| ||||    
T  16870563 ttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgttcatttgtttgtttggtgggtcaagaactcataatttgcttgt 16870662  T
Q  314 ttggtgagtcgagtgttcataatttggttgcttggtga 351  Q
    |||||||||||| |  ||| | |||||||| |||||||    
T  16870663 ttggtgagtcgatttctcacactttggttgtttggtga 16870700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 16870760 - 16870815
Alignment:
Q  286 gtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggtt 342  Q
    ||||||||||| || ||| ||||||||||| |||||||||||| |||||||||||||    
T  16870760 gtgagtcaagttcttaca-tttggttgtttcgtgagtcgagtgctcataatttggtt 16870815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 323
Target Start/End: Original strand, 54147640 - 54147700
Alignment:
Q  263 ctcacaattggtttatttgtttggtgagtcaagtgctcacactttggttgtttggtgagtc 323  Q
    ||||| ||||| || ||||||||||| |||||||||||| | |||| ||||||||||||||    
T  54147640 ctcactattggattgtttgtttggtgggtcaagtgctcataatttgtttgtttggtgagtc 54147700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 54147713 - 54147761
Alignment:
Q  274 tttatttgtttggtgagtcaagtgctcacactttggttgtttggtgagt 322  Q
    |||| |||||||||||||| ||| |||||| ||||||||||||||||||    
T  54147713 tttagttgtttggtgagtctagttctcacattttggttgtttggtgagt 54147761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 16870659 - 16870701
Alignment:
Q  279 ttgtttggtgagtcaagtgctcacactttggttgtttggtgag 321  Q
    |||||||||||||| | | ||||||||||||||||||||||||    
T  16870659 ttgtttggtgagtcgatttctcacactttggttgtttggtgag 16870701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 54147869 - 54147905
Alignment:
Q  306 ttggttgtttggtgagtcgagtgttcataatttggtt 342  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  54147869 ttggttgtttggtgagtcgagtgctcacaatttggtt 54147905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 162 - 351
Target Start/End: Complemental strand, 1173798 - 1173605
Alignment:
Q  162 ggttcgtcaatttgtctttgcctggttcgtttgattcagttcggtttgatttggattcggttggttcaatttgtttggttgttaggcgagtcaagatatt 261  Q
    ||||| ||||||||| || || ||| ||||||| ||  |||| ||||||||||| |||| ||| || ||||||||||||||||||| ||||||||||| |    
T  1173798 ggttcatcaatttgttttcgcttggctcgtttggtttggttcagtttgatttggtttcgtttgattaaatttgtttggttgttaggtgagtcaagatagt 1173699  T
Q  262 cctcacaattg----gtttatttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggttgcttggtga 351  Q
     |||| |||||    |||| ||||||||||| |||||||||||| | |||| |||||||||| |||||||| |||||||||| ||| |||||||    
T  1173698 tctcaaaattggtttgtttgtttgtttggtgggtcaagtgctcataatttgtttgtttggtgggtcgagtgctcataatttgtttgtttggtga 1173605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 278 - 397
Target Start/End: Complemental strand, 38584200 - 38584081
Alignment:
Q  278 tttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggttgcttggtgaaataagtacccacaatttggtttttt 377  Q
    |||| ||||||||||||||||||||| |||||| |||||||||||  |||| ||| |||||||||| |||||||  ||| | | ||||||||| ||||||    
T  38584200 tttggttggtgagtcaagtgctcacaatttggtagtttggtgagttaagtgctcacaatttggttgtttggtgagttaaatgctcacaatttgatttttt 38584101  T
Q  378 ctctcccttttgattcttct 397  Q
    ||| ||||||||||||||||    
T  38584100 ctcccccttttgattcttct 38584081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 325
Target Start/End: Original strand, 32290585 - 32290647
Alignment:
Q  263 ctcacaattggtttatttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcga 325  Q
    ||||||||| | |||||| ||||||| |||||||||||||| |||||||||||||||||||||    
T  32290585 ctcacaatttggttatttttttggtgggtcaagtgctcacaatttggttgtttggtgagtcga 32290647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 1173554 - 1173491
Alignment:
Q  278 tttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggtt 342  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||| |||||||||    
T  1173554 tttgtttggtgagt-aagcgctcacactttggttgtttggtgagtctagtgctcacaatttggtt 1173491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 349
Target Start/End: Complemental strand, 38584326 - 38584195
Alignment:
Q  222 ttggttcaatttgtttggttgttaggcgagtcaagatattcctcacaa-ttggttt----atttgtttggtgagtcaagtgctcacactttggttgtttg 316  Q
    ||||||||||||||||||||||| || ||||||| ||| | ||||||| |||||||     ||||||||||| || |||  |||||| |||| |||||||    
T  38584326 ttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaatttggtttgttcgtttgtttggtgggt-aagcactcacaatttgcttgtttg 38584228  T
Q  317 gtgagtcgagtgttcataatttggttgcttggt 349  Q
    |||||||||||| ||| | |||||||| |||||    
T  38584227 gtgagtcgagtgctcacattttggttgtttggt 38584195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 351
Target Start/End: Complemental strand, 1173647 - 1173574
Alignment:
Q  278 tttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggttgcttggtga 351  Q
    ||||||||||| ||| |||||||| | |||| ||||||||||||||||||  ||||| |||||||| |||||||    
T  1173647 tttgtttggtgggtcgagtgctcataatttgtttgtttggtgagtcgagtactcatattttggttgtttggtga 1173574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 373
Target Start/End: Complemental strand, 38584234 - 38584136
Alignment:
Q  279 ttgtttggtgagtcaagtgctcacactttggttgtt----tggtgagtcgagtgttcataatttggttgcttggtgaaataagtacccacaatttggtt 373  Q
    |||||||||||||| |||||||||| ||||||||||    ||||||||| |||| ||| |||||||| | |||||||  ||||| | ||||||||||||    
T  38584234 ttgtttggtgagtcgagtgctcacattttggttgtttggttggtgagtcaagtgctcacaatttggtagtttggtgagttaagtgctcacaatttggtt 38584136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 351
Target Start/End: Original strand, 8986125 - 8986262
Alignment:
Q  222 ttggttcaatttgtttggttgttaggcgagtcaagatattcctcacaattgg--------tttatttgtttggtgagtcaagtgctcacactttggttgt 313  Q
    ||||||||||||||||||||||| || ||||||| ||| | |||||||||||        ||| ||||||||||| ||||||  |||| | |||| ||||    
T  8986125 ttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttgttcatttgtttgtttggtgggtcaagaactcataatttgcttgt 8986224  T
Q  314 ttggtgagtcgagtgttcataatttggttgcttggtga 351  Q
    |||||||||||| |  ||| | |||||||| |||||||    
T  8986225 ttggtgagtcgatttctcacactttggttgtttggtga 8986262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 1173367 - 1173305
Alignment:
Q  279 ttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggtt 342  Q
    |||||||||||||| ||| |||||| |||| |||||| |||||||||||| ||| |||||||||    
T  1173367 ttgtttggtgagtctagttctcaca-tttgattgtttagtgagtcgagtgctcacaatttggtt 1173305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 328
Target Start/End: Complemental strand, 1173616 - 1173566
Alignment:
Q  278 tttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtg 328  Q
    ||||||||||||||| ||| |||| | ||||||||||||||||||| ||||    
T  1173616 tttgtttggtgagtcgagtactcatattttggttgtttggtgagtctagtg 1173566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 8986221 - 8986263
Alignment:
Q  279 ttgtttggtgagtcaagtgctcacactttggttgtttggtgag 321  Q
    |||||||||||||| | | ||||||||||||||||||||||||    
T  8986221 ttgtttggtgagtcgatttctcacactttggttgtttggtgag 8986263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 351
Target Start/End: Original strand, 32290565 - 32290642
Alignment:
Q  278 tttgtttggtgagtcaagtgctcacactttgg----ttgtttggtgagtcgagtgttcataatttggttgcttggtga 351  Q
    ||||||||||| |||||||||||||| |||||    || ||||||| ||| |||| ||| |||||||||| |||||||    
T  32290565 tttgtttggtgggtcaagtgctcacaatttggttatttttttggtgggtcaagtgctcacaatttggttgtttggtga 32290642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 38584067 - 38584019
Alignment:
Q  376 ttctctcccttttgattcttctgtgtgattgcattacaattctccccct 424  Q
    ||||| ||||||||||| ||||| ||||||||||| || ||||||||||    
T  38584067 ttctcccccttttgatttttctgagtgattgcattgcacttctccccct 38584019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 15630108 - 15630044
Alignment:
Q  278 tttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggtt 342  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  15630108 tttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtt 15630044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 225 - 374
Target Start/End: Complemental strand, 2076050 - 2075898
Alignment:
Q  225 gttcaatttgtttggttgttaggcgagtcaagatattcctcacaattggtttatttgtttggtgagtca---agtgctcacactttggttgtttggtgag 321  Q
    ||||||||||||| |||||| || |||||||||||   ||||| ||||||||| |||||||||| ||     | |||||||| ||||||||||||  |||    
T  2076050 gttcaatttgtttagttgttgggtgagtcaagatagggctcaccattggtttaattgtttggtgggtgggtgattgctcacaatttggttgtttgacgag 2075951  T
Q  322 tcgagtgttcataatttggttgcttggtgaaataagtacccacaatttggttt 374  Q
    ||||||| ||||| |||||||| |||||||  || |||| |||||||||||||    
T  2075950 tcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggttt 2075898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 239 - 368
Target Start/End: Complemental strand, 19825223 - 19825091
Alignment:
Q  239 gttgttaggcgagtcaagatattcctcacaattggtttatttgtttggt----gagtcaagtgctcacactttggttgtttggtgagtcgagtgttcata 334  Q
    |||||| || ||||||||||| | ||||||||| |||| ||||||||||    |||| ||||||||||| ||||||||||||| |||||||||| ||| |    
T  19825223 gttgtttggtgagtcaagataatgctcacaatttgtttgtttgtttggttggtgagt-aagtgctcacaatttggttgtttggcgagtcgagtgctcaca 19825125  T
Q  335 atttggttgcttggtgaaataagtacccacaatt 368  Q
    ||||||||| |||||||  ||||| | |||||||    
T  19825124 atttggttgtttggtgagttaagtgctcacaatt 19825091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 374
Target Start/End: Complemental strand, 2072520 - 2072368
Alignment:
Q  225 gttcaatttgtttggttgttaggcgagtcaagatattcctcacaattggtttatttgtttggtgagtca---agtgctcacactttggttgtttggtgag 321  Q
    ||||||||||||| |||||| || |||||||||||   ||||| ||||||||  |||||||||| ||     | |||||||| |||| ||||||| ||||    
T  2072520 gttcaatttgtttagttgttgggtgagtcaagatagggctcaccattggtttgattgtttggtgggtgggtgattgctcacaatttgattgtttgatgag 2072421  T
Q  322 tcgagtgttcataatttggttgcttggtgaaataagtacccacaatttggttt 374  Q
    ||||||| ||||| |||||||| |||||||  || |||| |||||||||||||    
T  2072420 tcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggttt 2072368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 396
Target Start/End: Complemental strand, 15630107 - 15630022
Alignment:
Q  310 ttgtttggtgagtcgagtgttcataatttggttgcttggtgaaataagtacccacaatttggttttttctctcccttttgattcttc 396  Q
    ||||||||||||||||||| ||| | |||||||| |||||||    ||| | ||||||||||||| ||||| |||||||||||||||    
T  15630107 ttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtttcttctc-cccttttgattcttc 15630022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 15630014 - 15629952
Alignment:
Q  279 ttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggtt 342  Q
    |||||| ||||||| | | |||||| |||||||||||||||||||||||| ||| |||||||||    
T  15630014 ttgtttagtgagtctaattctcaca-tttggttgtttggtgagtcgagtgctcacaatttggtt 15629952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 351
Target Start/End: Original strand, 50295474 - 50295603
Alignment:
Q  222 ttggttcaatttgtttggttgttaggcgagtcaagatattcctcacaattggtttatttgtttggtgagtcaagtgctcacactttggttgtttggtgag 321  Q
    ||||||||||||||||||||||| |  ||||  ||||| | | ||||||| | || ||||||| ||| |||||||||||||| ||||||||||| |||||    
T  50295474 ttggttcaatttgtttggttgttggatgagttgagatagtgcacacaatttgattgtttgtttagtgggtcaagtgctcacaatttggttgtttcgtgag 50295573  T
Q  322 tcgagtgttcataatttggttgcttggtga 351  Q
    ||||||| ||| | || ||||| |||||||    
T  50295574 tcgagtgctcacacttgggttgtttggtga 50295603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 279 - 393
Target Start/End: Original strand, 50295562 - 50295677
Alignment:
Q  279 ttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggttgcttggtgaaataagtacccacaatttggttttttc 378  Q
    |||||| ||||||| ||||||||||||| ||||||||||||||| ||||  || || |||| ||| |||||||  ||||||| || |||||||||| |||    
T  50295562 ttgtttcgtgagtcgagtgctcacacttgggttgtttggtgagttgagttctcgtactttgattgtttggtgagttaagtactcataatttggtttcttc 50295661  T
Q  379 t-ctcccttttgattc 393  Q
    | | ||||||||||||    
T  50295662 tccccccttttgattc 50295677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 42530741 - 42530803
Alignment:
Q  279 ttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggtt 342  Q
    |||||||||||||| ||| |||||||||||||||||||||||| || ||| ||| |||||||||    
T  42530741 ttgtttggtgagtcgagttctcacactttggttgtttggtgag-cgtgtgctcacaatttggtt 42530803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 342
Target Start/End: Complemental strand, 46692034 - 46691973
Alignment:
Q  281 gtttggtgagtcaagtgctcacactttggttgttt-ggtgagtcgagtgttcataatttggtt 342  Q
    |||||||||||| ||| |||||| ||||||||||| ||||||||||||||||| |||||||||    
T  46692034 gtttggtgagtctagttctcaca-tttggttgttttggtgagtcgagtgttcacaatttggtt 46691973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 46692129 - 46692067
Alignment:
Q  279 ttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggtt 342  Q
    |||||||||||||| | | |||||| ||| |||||||||||||||||||| ||| |||||||||    
T  46692129 ttgtttggtgagtctaattctcaca-tttagttgtttggtgagtcgagtgctcacaatttggtt 46692067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 396
Target Start/End: Complemental strand, 46692078 - 46692044
Alignment:
Q  362 cacaatttggttttttctctcccttttgattcttc 396  Q
    ||||||||||||| |||||||||||||||||||||    
T  46692078 cacaatttggtttcttctctcccttttgattcttc 46692044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 325
Target Start/End: Original strand, 21861942 - 21862071
Alignment:
Q  199 agttcggtttgatttggattcggttggttcaatttgtttggttgttaggcgagtcaagatattcctcacaattggtttatttgtttggtgagt---caag 295  Q
    ||||| ||||||||||| |||| |||||||||||| ||||||| ||  | ||||||| ||| | |||||||||||||| |||||||| |  ||    |||    
T  21861942 agttcagtttgatttggtttcgtttggttcaatttatttggtttttgagtgagtcaaaatagttctcacaattggtttgtttgtttgtttggtgggaaag 21862041  T
Q  296 tgctcacactttggttgtttggtgagtcga 325  Q
     ||||||| |||| ||||||||||||||||    
T  21862042 cgctcacaatttgcttgtttggtgagtcga 21862071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 342
Target Start/End: Original strand, 10741458 - 10741566
Alignment:
Q  234 gtttggttgttaggcgagtcaagatattcctcacaattggtttatttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcat 333  Q
    ||||| ||||| || ||||||||||| |  |||||||| |||| ||||||||||| |||| |||    ||||||||||||| ||||||||||||  |||     
T  10741458 gtttgtttgtttggtgagtcaagatagtgttcacaatttgtttgtttgtttggtgggtcaggtgtgagcactttggttgttcggtgagtcgagtactcac 10741557  T
Q  334 aatttggtt 342  Q
    |||||||||    
T  10741558 aatttggtt 10741566  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 21862149 - 21862211
Alignment:
Q  279 ttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggtt 342  Q
    |||||||||||||| ||| |||||| |||||||||||||||||||||||| |||  ||||||||    
T  21862149 ttgtttggtgagtctagttctcaca-tttggttgtttggtgagtcgagtgctcaatatttggtt 21862211  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 21862246 - 21862308
Alignment:
Q  279 ttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggtt 342  Q
    |||||||||||||| ||  |||||| |||||||||||||||||||||||| ||| |||||||||    
T  21862246 ttgtttggtgagtctagctctcaca-tttggttgtttggtgagtcgagtgctcacaatttggtt 21862308  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 325
Target Start/End: Original strand, 13167356 - 13167414
Alignment:
Q  267 caattggtttatttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcga 325  Q
    ||||| |||| ||||||||||| ||||||||||| || |||| ||||||||||||||||    
T  13167356 caatttgtttgtttgtttggtgggtcaagtgctcgcaatttgcttgtttggtgagtcga 13167414  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 275
Target Start/End: Complemental strand, 28063844 - 28063770
Alignment:
Q  200 gttcggtttgatttggattcggttggttcaatttgtttggttgttaggcgagtcaagatattcctcacaattggtt 275  Q
    |||| ||||||||||| |||| ||||||||| |||||||||||||||| |||| |||||  | |||||| ||||||    
T  28063844 gttcagtttgatttggtttcgtttggttcaa-ttgtttggttgttaggtgagttaagattgtgctcacatttggtt 28063770  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 373
Target Start/End: Original strand, 13097871 - 13097970
Alignment:
Q  273 gtttatttgtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggttgcttggtgaaataagtacccacaatttggt 372  Q
    |||| |||| ||||||| |||| ||||||||  ||||||||||| ||||||||||| ||| || ||| ||| ||| ||| | |||| | |||||||||||    
T  13097871 gtttctttggttggtga-tcaaatgctcacaaattggttgtttgatgagtcgagtgctcacaaattgtttgtttgttgagacaagtgctcacaatttggt 13097969  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 396
Target Start/End: Original strand, 20241878 - 20242053
Alignment:
Q  222 ttggttcaatttgtttggttgttaggcgagtcaagatattcctcacaattggttt----atttgtttggtgagtcaagtgctcacactttggttgtttgg 317  Q
    ||||||||||||||||||||||| || ||||||| ||| | ||||||||| ||||     ||||||||||| ||| ||  |||| | |||| ||||||||    
T  20241878 ttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtc-agcactcataatttgcttgtttgg 20241976  T
Q  318 tgagtcgagtgttcataatttggttgcttggtgaaataagtacccacaatttggttttttctctcccttttgattcttc 396  Q
    ||||||||||  ||| | |||||||| |||||| |    || | ||||||||||||| ||||| |||||||||||||||    
T  20241977 tgagtcgagttctcacattttggttgtttggtg-agcgtgtgctcacaatttggtttcttctc-cccttttgattcttc 20242053  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 396
Target Start/End: Complemental strand, 20251189 - 20251014
Alignment:
Q  222 ttggttcaatttgtttggttgttaggcgagtcaagatattcctcacaattggttt----atttgtttggtgagtcaagtgctcacactttggttgtttgg 317  Q
    ||||||||||||||||||||||| || ||||||| ||| | ||||||||| ||||     ||||||||||| ||| ||  |||| | |||| ||||||||    
T  20251189 ttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttgttcgtttgtttggtgggtc-agcactcataatttgcttgtttgg 20251091  T
Q  318 tgagtcgagtgttcataatttggttgcttggtgaaataagtacccacaatttggttttttctctcccttttgattcttc 396  Q
    ||||||||||  ||| | |||||||| |||||| |    || | ||||||||||||| ||||| |||||||||||||||    
T  20251090 tgagtcgagttctcacattttggttgtttggtg-agcgtgtgctcacaatttggtttcttctc-cccttttgattcttc 20251014  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 342
Target Start/End: Original strand, 20242063 - 20242123
Alignment:
Q  281 gtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggtt 342  Q
    |||||||||||| ||| |||||||||||||||||||||||| || ||| ||| |||||||||    
T  20242063 gtttggtgagtcgagttctcacactttggttgtttggtgag-cgtgtgctcacaatttggtt 20242123  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 342
Target Start/End: Complemental strand, 20251004 - 20250944
Alignment:
Q  281 gtttggtgagtcaagtgctcacactttggttgtttggtgagtcgagtgttcataatttggtt 342  Q
    |||||||||||| ||| |||||||||||||||||||||||| || ||| ||| |||||||||    
T  20251004 gtttggtgagtcgagttctcacactttggttgtttggtgag-cgtgtgctcacaatttggtt 20250944  T

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