View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10785_low_1 (Length: 622)

Name: NF10785_low_1
Description: NF10785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10785_low_1
NF10785_low_1
[»] chr7 (8 HSPs)
chr7 (141-622)||(21368493-21368980)
chr7 (159-622)||(16156783-16157253)
chr7 (154-597)||(22707567-22708001)
chr7 (19-93)||(16156629-16156703)
chr7 (19-84)||(22708237-22708302)
chr7 (427-492)||(9595414-9595478)
chr7 (427-492)||(9646377-9646441)
chr7 (430-471)||(32706452-32706493)
[»] scaffold0671 (1 HSPs)
scaffold0671 (141-622)||(1864-2351)
[»] chr5 (8 HSPs)
chr5 (141-622)||(22821145-22821634)
chr5 (19-93)||(22821704-22821778)
chr5 (19-85)||(22822072-22822138)
chr5 (388-471)||(11126413-11126497)
chr5 (407-471)||(29951844-29951909)
chr5 (427-471)||(244438-244482)
chr5 (427-471)||(29950227-29950271)
chr5 (427-471)||(4568361-4568405)
[»] chr3 (9 HSPs)
chr3 (141-622)||(33757818-33758305)
chr3 (141-622)||(13179735-13180227)
chr3 (141-622)||(13184393-13184885)
chr3 (19-93)||(33758375-33758449)
chr3 (23-93)||(13180297-13180367)
chr3 (388-471)||(16019451-16019535)
chr3 (429-471)||(5553584-5553626)
chr3 (427-468)||(22271244-22271285)
chr3 (58-93)||(13184955-13184990)
[»] chr1 (6 HSPs)
chr1 (141-622)||(37260146-37260634)
chr1 (19-93)||(37260002-37260076)
chr1 (427-471)||(6473884-6473928)
chr1 (427-471)||(22062142-22062186)
chr1 (426-469)||(20190431-20190474)
chr1 (427-471)||(20127181-20127225)
[»] scaffold0065 (2 HSPs)
scaffold0065 (141-620)||(33630-34117)
scaffold0065 (23-93)||(34166-34236)
[»] chr4 (9 HSPs)
chr4 (141-622)||(11475382-11475869)
chr4 (343-622)||(34455684-34455966)
chr4 (19-93)||(11475238-11475312)
chr4 (407-471)||(17266695-17266760)
chr4 (427-471)||(9167295-9167339)
chr4 (427-471)||(15017640-15017684)
chr4 (427-471)||(15019280-15019324)
chr4 (427-471)||(39488147-39488191)
chr4 (430-492)||(34098832-34098893)
[»] chr8 (11 HSPs)
chr8 (141-622)||(18774152-18774641)
chr8 (321-622)||(16417404-16417708)
chr8 (141-464)||(17462373-17462704)
chr8 (141-375)||(17470371-17470611)
chr8 (460-620)||(17459707-17459868)
chr8 (19-93)||(17465175-17465249)
chr8 (19-93)||(18774711-18774785)
chr8 (19-93)||(17462774-17462848)
chr8 (350-471)||(18446160-18446280)
chr8 (141-182)||(17465064-17465105)
chr8 (427-471)||(20730984-20731028)
[»] scaffold0003 (1 HSPs)
scaffold0003 (343-622)||(288909-289189)
[»] scaffold0359 (1 HSPs)
scaffold0359 (327-622)||(8615-8913)
[»] chr6 (12 HSPs)
chr6 (343-622)||(21299244-21299526)
chr6 (357-489)||(12639454-12639586)
chr6 (141-251)||(12639329-12639439)
chr6 (506-603)||(9344211-9344308)
chr6 (19-93)||(12639185-12639259)
chr6 (19-89)||(9344042-9344112)
chr6 (427-492)||(30518262-30518326)
chr6 (427-471)||(18553447-18553491)
chr6 (427-471)||(18781863-18781907)
chr6 (427-471)||(20417550-20417594)
chr6 (427-471)||(20419636-20419680)
chr6 (427-471)||(20414903-20414947)
[»] chr2 (5 HSPs)
chr2 (355-622)||(44794703-44794973)
chr2 (488-622)||(21465117-21465252)
chr2 (512-622)||(44794602-44794716)
chr2 (427-471)||(6050220-6050264)
chr2 (427-471)||(15409909-15409953)
[»] scaffold0002 (1 HSPs)
scaffold0002 (457-622)||(127083-127253)
[»] scaffold0076 (1 HSPs)
scaffold0076 (427-472)||(54881-54926)
[»] scaffold0585 (1 HSPs)
scaffold0585 (427-471)||(870-914)
[»] scaffold0146 (1 HSPs)
scaffold0146 (427-471)||(6725-6769)
[»] scaffold0096 (1 HSPs)
scaffold0096 (427-471)||(22612-22656)
[»] scaffold0083 (1 HSPs)
scaffold0083 (427-471)||(33327-33371)
[»] scaffold0010 (1 HSPs)
scaffold0010 (427-471)||(136867-136911)
[»] scaffold0075 (1 HSPs)
scaffold0075 (427-471)||(25758-25802)
[»] scaffold0017 (1 HSPs)
scaffold0017 (427-471)||(4591-4635)


Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 141 - 622
Target Start/End: Complemental strand, 21368980 - 21368493
Alignment:
Q  141 agaccagccaccctcattcattgatttgtcttgtaaccatttcttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggctg 240  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21368980 agaccagccaccctcattcattgatttgtcttgttaccattttttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggctg 21368881  T
Q  241 aaggaatcttaagagttatttgcattttttctttgtaattcagcaagtgtccctcctaccta------ggacacgaaaattgaataaaaaggcaagttaa 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||| |||||||    
T  21368880 aaggaatcttaagagttatttgcattttttctttgtaattcagcaagtgtccctcctacctatatataggacacgaaaattgaataaaaagg-aagttaa 21368782  T
Q  335 tttttgttaaaaaagtgagtaattgctctttaggttctgcattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccataga 434  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21368781 tttttgttaaaaaagtgagtaattgctctttaggttctggattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccataga 21368682  T
Q  435 cttatcattttctaggattagaaagtgtggcgtccctaaactctccatttcatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaaccaa 534  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  21368681 cttatcattttctaggattagaaagtgtggcatccctaaactctccattccatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaactaa 21368582  T
Q  535 attctcattttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcc-tttggcacaccctttcattaacaatatt 622  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21368581 attctaattttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttccttttggcacaccctttcattaacaatatt 21368493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 159 - 622
Target Start/End: Original strand, 16156783 - 16157253
Alignment:
Q  159 cattgatttgtcttgtaaccatttcttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggctgaaggaatcttaagagtta 258  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  16156783 cattgatttgtcgtgtaaccatttcttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggcggaaggaatcctaagagtta 16156882  T
Q  259 tttgcattttttctttgtaattcagcaagtgtccctcctaccta------ggacacgaaaattgaataaaaaggcaagttaatttttgttaaaa--aagt 350  Q
    ||||||||||| ||||||||||||||||||||||||||||||||      ||||||||||||||||||||| | ||||||||||||||||||||  ||||    
T  16156883 tttgcattttt-ctttgtaattcagcaagtgtccctcctacctatatataggacacgaaaattgaataaaa-gacaagttaatttttgttaaaaaaaagt 16156980  T
Q  351 gagtaattgctctttaggttctgcattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccatagacttatcattttctagg 450  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16156981 gagtaattgctctttaggttctggattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccatagacttatcattttctagg 16157080  T
Q  451 attagaaagtgtggcgtccctaaactctccatttcatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaaccaaattctcattttcaact 550  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16157081 attagaaagtgtggcgtccctaaactctccattccatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaaccaaattctcattttcaact 16157180  T
Q  551 caaatcattgtcaaaattaatcccaatacataattttcgtttc-ctttggcacaccctttcattaacaatatt 622  Q
    |||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||    
T  16157181 caaatcattgtcaaaattaatcccaatacataattttcatttctttttggcacaccctttcattaacaatatt 16157253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 154 - 597
Target Start/End: Complemental strand, 22708001 - 22707567
Alignment:
Q  154 tcattcattgatttgtcttgtaaccatttcttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggctgaaggaatcttaag 253  Q
    ||||||||||||||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||    
T  22708001 tcattcattgatttgtcttgtaaccattttttatattgatgttaatttactttagccataggaaataatgattgattaattttgctgaaggaatcttaag 22707902  T
Q  254 agttatttgcattttttctttgtaattcagcaagtgtccctcctaccta------ggacacgaaaattgaataaaaaggcaagttaatttttgttaaaaa 347  Q
     ||||||||| ||||  ||||||||||| |||||||||  |||||||||      ||||||||||||||||||||||   ||||| | ||||||||||||    
T  22707901 tgttatttgccttttc-ctttgtaattcggcaagtgtcattcctacctatatataggacacgaaaattgaataaaaatt-aagttgaattttgttaaaaa 22707804  T
Q  348 agtgagtaattgctctttaggttctgcattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcatt-ccatagacttatcattttc 446  Q
     | |||||||||||||||||||| || ||||||||||||||         |||||||||||||||||||||||||| ||| |||||| ||||||| ||||    
T  22707803 -gcgagtaattgctctttaggttatgaattggaccttgtat---------caagaatcctttcttgtggtgatctttatttccataggcttatcagtttc 22707714  T
Q  447 taggattagaaagtgtggcgtccctaaactctccatttcatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaaccaaattctcattttc 546  Q
    ||||||||||||||| |||||||||||||| || ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       
T  22707713 taggattagaaagtgaggcgtccctaaactttctattgcatttcttgtttgaaaccacaaatcaacctaaacaccaattcaaaaccaaattctcatt--- 22707617  T
Q  547 aactcaaatcattgtcaaaattaatcccaatacataattttcgtttccttt 597  Q
     | |||||||||| |||||||||||||||||||||||||||| ||||||||    
T  22707616 -attcaaatcattatcaaaattaatcccaatacataattttcttttccttt 22707567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 16156629 - 16156703
Alignment:
Q  19 taaagagcatttaatctgaaggaggaaagaattcaagaattgaagaggaaagagacaagacttcaatgagacaat 93  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  16156629 taaagatcatttaatctgaaggaggaaagaatgcaagaattgaagaggaaagggacaagacttcaatgagacaat 16156703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 22708302 - 22708237
Alignment:
Q  19 taaagagcatttaatctgaaggaggaaagaattcaagaattgaagaggaaagagacaagacttcaa 84  Q
    |||||| |||||||||||||||||||||||||  |||||||||| |||||| ||||||||||||||    
T  22708302 taaagaacatttaatctgaaggaggaaagaatgtaagaattgaaaaggaaacagacaagacttcaa 22708237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 427 - 492
Target Start/End: Complemental strand, 9595478 - 9595414
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccctaaactctccatttcatttctt 492  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||   || |||||||||||||||    
T  9595478 tccatagacttatcactttcttggattagaaagtgtggcgtccct-gtctatccatttcatttctt 9595414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 427 - 492
Target Start/End: Complemental strand, 9646441 - 9646377
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccctaaactctccatttcatttctt 492  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||   || |||||||||||||||    
T  9646441 tccatagacttatcactttcttggattagaaagtgtggcgtccct-gtctatccatttcatttctt 9646377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 471
Target Start/End: Original strand, 32706452 - 32706493
Alignment:
Q  430 atagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    |||||||||||| ||||| |||||||||||||||| ||||||    
T  32706452 atagacttatcactttcttggattagaaagtgtggtgtccct 32706493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0671 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 141 - 622
Target Start/End: Original strand, 1864 - 2351
Alignment:
Q  141 agaccagccaccctcattcattgatttgtcttgtaaccatttcttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggctg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1864 agaccagccaccctcattcattgatttgtcttgtaaccatttcttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggctg 1963  T
Q  241 aaggaatcttaagagttatttgcattttttctttgtaattcagcaagtgtccctcctaccta------ggacacgaaaattgaataaaaaggcaagttaa 334  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||      ||||||||||||||||||||| | ||||||||    
T  1964 aaggaatcctaagagttatttgcattttt-ctttgtaattcagcaagtgtccctcctacctatatataggacacgaaaattgaataaaa-gacaagttaa 2061  T
Q  335 tttttgttaaaa-aagtgagtaattgctctttaggttctgcattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccatag 433  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2062 tttttgttaaaaaaagtgagtaattgctctttaggttctggattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccatag 2161  T
Q  434 acttatcattttctaggattagaaagtgtggcgtccctaaactctccatttcatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaacca 533  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  2162 acttatcattttctaggattagaaagtgtggcgtccctaaactctgcattccaattcttgtttgaaaccacaaatcagcctaaacaccaattcaaaacca 2261  T
Q  534 aattctcattttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttc-ctttggcacaccctttcattaacaatatt 622  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| ||||||||||||||||    
T  2262 aattctcattttcaactcaaatcattgtcaaaattaatcccaatacatgattttcgtttctttttggcacaccttttcattaacaatatt 2351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 141 - 622
Target Start/End: Complemental strand, 22821634 - 22821145
Alignment:
Q  141 agaccagccaccctcattcattgatttgtcttgtaaccatttcttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggctg 240  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  22821634 agaccagccaccctcattcattgatttgtcttgtaaccatttgttgtattcatgttaatttacttcaaccataggaaataatgatagattaatttggctg 22821535  T
Q  241 aaggaatcttaagagttatttgcattttttctttgtaattcagcaagtgtccctcctaccta------ggacacgaaaattgaataaaaagg-caagtta 333  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||      ||||||| |||||||||||||||| |||||||    
T  22821534 aaggaatcttaagagttatttgcattttttctttttaattcggcaagtgtccctcctacctatatataggacacggaaattgaataaaaagggcaagtta 22821435  T
Q  334 atttttgttaaaaaagtgagtaattgctctttaggttctgcattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccatag 433  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  22821434 atttttgttaaaaaagtgagtaattgctctttaggttctggattggaccttgtattgatcatatcaagaatcctttcttggggtgaacttcattccatag 22821335  T
Q  434 acttatcattttctaggattagaaagtgtggcgtccctaaactctccatttcatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaacca 533  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22821334 acttatcattttctaagattagaaagtgtggcgttcctaaactctccattccatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaacca 22821235  T
Q  534 aattctcattttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcc-tttggcacaccctttcattaacaatatt 622  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22821234 aattctcattttcaactcaattcattgccaaaattaatcccaatacataattttcgtttccttttggcacaccctttcattaacaatatt 22821145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 22821778 - 22821704
Alignment:
Q  19 taaagagcatttaatctgaaggaggaaagaattcaagaattgaagaggaaagagacaagacttcaatgagacaat 93  Q
    |||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  22821778 taaagagcatttaatctgaaggagaaaataatgcaagaattgaagaggaaagagacaagacttcaatgagacaat 22821704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 22822138 - 22822072
Alignment:
Q  19 taaagagcatttaatctgaaggaggaaagaattcaagaattgaagaggaaagagacaagacttcaat 85  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  22822138 taaagagcatttaatctgaaggaggaaataatgcaagaattgaagaggaaagagacaagacttcaat 22822072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 388 - 471
Target Start/End: Complemental strand, 11126497 - 11126413
Alignment:
Q  388 ttgatcatatcaagaatcctttcttgtggtgatcttc-attccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    |||||||||||||||||||||||||||||||||| || || ||||||||||| || ||||| ||||||||||||||||| |||||    
T  11126497 ttgatcatatcaagaatcctttcttgtggtgatcctcaatcccatagacttaccactttcttggattagaaagtgtggcatccct 11126413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 407 - 471
Target Start/End: Original strand, 29951844 - 29951909
Alignment:
Q  407 tttcttgtggtgatcttcat-tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||   ||||||||||||||| ||||| |||||||||||||||||||||||    
T  29951844 tttcttgtggtgatcctcgcatccatagacttatcactttcttggattagaaagtgtggcgtccct 29951909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 244482 - 244438
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  244482 tccatagacttatcactttcttggattagaaagtgtggcgtccct 244438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Original strand, 29950227 - 29950271
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  29950227 tccatagacttatcactttcttggattagaaagtgtggcgtccct 29950271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 471
Target Start/End: Original strand, 4568361 - 4568405
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||| | |||||||||||||||||||||||    
T  4568361 tccatagacttatcacttttttggattagaaagtgtggcgtccct 4568405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 141 - 622
Target Start/End: Complemental strand, 33758305 - 33757818
Alignment:
Q  141 agaccagccaccctcattcattgatttgtcttgtaaccatttcttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggctg 240  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33758305 agaccagccactctcattcatttatttgtcttgtaaccatttcttgtattcatgttaatttacttcagccataggaaatactgatagattaatttggctg 33758206  T
Q  241 aaggaatcttaagagttatttgcattttttctttgtaattcagcaagtgtccctcctacctag------gacacgaaaattgaataaaaaggcaagttaa 334  Q
    ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  33758205 aag-aatcttaagagttatttgcattttttctttgtaattcaacaagtgtccctcctacctatatatatgacacgaaaattgaataaaaaggcaagttaa 33758107  T
Q  335 tttttgttaaaaaagtgagtaattgctctttaggttctgcattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccataga 434  Q
    ||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  33758106 tttttgttaaaaaagcgagtaattgctctttaggttctagattggaccttgtattgatcatataaagaatcctttcttgtggtgatcttcattcaataga 33758007  T
Q  435 cttatcattttctaggattagaaagtgtggcgtccctaaactctccatttcatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaaccaa 534  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33758006 cttatcattttctaggattagaaagtgtggcgtccctaaactctccattccatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaaccaa 33757907  T
Q  535 attctcattttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcc-tttggcacaccctttcattaacaatatt 622  Q
    ||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33757906 attataattttcaactcaaaccattgtcaaaattaatcccaatacataattttcgtttccttttggcacaccctttcattaacaatatt 33757818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 141 - 622
Target Start/End: Complemental strand, 13180227 - 13179735
Alignment:
Q  141 agaccagccaccctcattcattgatttgtcttgtaaccatttcttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggctg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13180227 agaccagccaccctcattcattgatttgtcttgtaaccatttcttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggctg 13180128  T
Q  241 aaggaatcttaagagttatttgcattttttctttgtaattcagcaagtgtccctcctaccta------ggacacgaaaattgaataaaaaggcaagttaa 334  Q
    |||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||      ||||||||||||||||||||| | ||||||||    
T  13180127 aaggaatcctaagagctatttgcattttt-ctttgtaattcagcaagtgtccctcctacctatatataggacacgaaaattgaataaaa-gacaagttaa 13180030  T
Q  335 tttttgttaaaaaa--gtgagtaattgctctttaggttctgcattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccata 432  Q
    |||| |||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13180029 ttttcgttaaaaaaaagtgagtaattgctctttaggttctggattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccata 13179930  T
Q  433 gacttatcattttctaggattagaaagtgtggcgtccctaaactctccatttcatttcttgtttgaaaccacaaatcagcctaaacaccaattc--aaaa 530  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||  ||||    
T  13179929 gacttatcattttctaggattagaaagtgtggcgtccctaaactctccattccatttcttgtttgaaaccacagatcagcctaaacaccaattcaaaaaa 13179830  T
Q  531 ccaaattctca-ttttcaact-caaatcattgtcaaaattaatcccaatacataattttcgtttcct-ttggcacaccctttcattaacaatatt 622  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  13179829 ccaaattctcatttttcaactccaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatt 13179735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 141 - 622
Target Start/End: Complemental strand, 13184885 - 13184393
Alignment:
Q  141 agaccagccaccctcattcattgatttgtcttgtaaccatttcttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggctg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13184885 agaccagccaccctcattcattgatttgtcttgtaaccatttcttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggctg 13184786  T
Q  241 aaggaatcttaagagttatttgcattttttctttgtaattcagcaagtgtccctcctaccta------ggacacgaaaattgaataaaaaggcaagttaa 334  Q
    |||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||      ||||||||||||||||||||| | ||||||||    
T  13184785 aaggaatcctaagagctatttgcattttt-ctttgtaattcagcaagtgtccctcctacctatatataggacacgaaaattgaataaaa-gacaagttaa 13184688  T
Q  335 tttttgttaaaaaa--gtgagtaattgctctttaggttctgcattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccata 432  Q
    |||| |||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13184687 ttttcgttaaaaaaaagtgagtaattgctctttaggttctggattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccata 13184588  T
Q  433 gacttatcattttctaggattagaaagtgtggcgtccctaaactctccatttcatttcttgtttgaaaccacaaatcagcctaaacaccaattc--aaaa 530  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||  ||||    
T  13184587 gacttatcattttctaggattagaaagtgtggcgtccctaaactctccattccatttcttgtttgaaaccacagatcagcctaaacaccaattcaaaaaa 13184488  T
Q  531 ccaaattctca-ttttcaact-caaatcattgtcaaaattaatcccaatacataattttcgtttcct-ttggcacaccctttcattaacaatatt 622  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  13184487 ccaaattctcatttttcaactccaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatt 13184393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 33758449 - 33758375
Alignment:
Q  19 taaagagcatttaatctgaaggaggaaagaattcaagaattgaagaggaaagagacaagacttcaatgagacaat 93  Q
    |||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  33758449 taaagagcatttaatctgaaagaggaaagaatgtaagaattgaagaggaaagagacaagacttcaatgagacaat 33758375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 13180367 - 13180297
Alignment:
Q  23 gagcatttaatctgaaggaggaaagaattcaagaattgaagaggaaagagacaagacttcaatgagacaat 93  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  13180367 gagcatttaatctgaaggatgaaagaatgcaagaattgaagaggaaagggacaagacttcaatgagacaat 13180297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 388 - 471
Target Start/End: Complemental strand, 16019535 - 16019451
Alignment:
Q  388 ttgatcatatcaagaatcctttcttgtggtgatcttc-attccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    |||||||||||||||||||||||||||||||||| || || ||| |||||||||| ||||| |||||||||||||| | ||||||    
T  16019535 ttgatcatatcaagaatcctttcttgtggtgatcctcaatcccagagacttatcactttcttggattagaaagtgtagtgtccct 16019451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 471
Target Start/End: Original strand, 5553584 - 5553626
Alignment:
Q  429 catagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||| ||||| |||||||||||||||||||||||    
T  5553584 catagacttatcactttcttggattagaaagtgtggcgtccct 5553626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 427 - 468
Target Start/End: Original strand, 22271244 - 22271285
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtc 468  Q
    ||||||||||||||| ||||| ||||||||||||||||||||    
T  22271244 tccatagacttatcactttctgggattagaaagtgtggcgtc 22271285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 93
Target Start/End: Complemental strand, 13184990 - 13184955
Alignment:
Q  58 ttgaagaggaaagagacaagacttcaatgagacaat 93  Q
    ||||||||||||| ||||||||||||||||||||||    
T  13184990 ttgaagaggaaagggacaagacttcaatgagacaat 13184955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 141 - 622
Target Start/End: Original strand, 37260146 - 37260634
Alignment:
Q  141 agaccagccaccctcattcattgatttgtcttgtaaccatttcttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggctg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37260146 agaccagccaccctcattcattgatttgtcttgtaaccatttcttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggatg 37260245  T
Q  241 aaggaatcttaagagttatttgcattttttctttgtaattcagcaagtgtccctcctaccta------ggacacgaaaattgaataaaaaggcaagttaa 334  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||      ||||||||||||||||||||| | ||||||||    
T  37260246 aaggaatcctaagagttatttgcattttt-ctttgtaattcagcaagtgtccctcctacctatatataggacacgaaaattgaataaaa-gacaagttaa 37260343  T
Q  335 tttttgttaaaa--aagtgagtaattgctctttaggttctgcattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccata 432  Q
    ||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37260344 tttttgttaaaaaaaagtgagtaattgctctttaggttctggattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccata 37260443  T
Q  433 gacttatcattttctaggattagaaagtgtggcgtccctaaactctccatttcatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaacc 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| |    
T  37260444 gacttatcattttctaggattagaaagtgtggcgtccctaaactctccattccaattcttgtttgaaaccacgaatcagcctaaacaccaattcaaaatc 37260543  T
Q  533 aaattctcattttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttc-ctttggcacaccctttcattaacaatatt 622  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||    
T  37260544 aaattctcattttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttctttttggcacaccctttcattgacaatatt 37260634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 37260002 - 37260076
Alignment:
Q  19 taaagagcatttaatctgaaggaggaaagaattcaagaattgaagaggaaagagacaagacttcaatgagacaat 93  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  37260002 taaagagcatttaatctgaaggagggaagaatgcaagaattgaagaggaaagggacaagacttcaatgagacaat 37260076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Original strand, 6473884 - 6473928
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  6473884 tccatagacttatcactttcttggattagaaagtgtggcgtccct 6473928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 22062186 - 22062142
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  22062186 tccatagacttatcactttcttggattagaaagtgtggcgtccct 22062142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 426 - 469
Target Start/End: Complemental strand, 20190474 - 20190431
Alignment:
Q  426 ttccatagacttatcattttctaggattagaaagtgtggcgtcc 469  Q
    |||||||||||||||| ||||| |||||||||||||||||||||    
T  20190474 ttccatagacttatcagtttcttggattagaaagtgtggcgtcc 20190431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 471
Target Start/End: Original strand, 20127181 - 20127225
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||  ||||| |||||||||||||||||||||||    
T  20127181 tccatagacttatcgctttcttggattagaaagtgtggcgtccct 20127225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 141 - 620
Target Start/End: Complemental strand, 34117 - 33630
Alignment:
Q  141 agaccagccaccctcattcattgatttgtcttgtaaccatttcttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggctg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  34117 agaccagccaccctcattcattgatttgtcttgtaaccatttcttgtattcatgttaatttactccagccttaggaaataatgatggattaatttggctg 34018  T
Q  241 aaggaatcttaagagttatttgcattttttctttgtaattcagcaagtgtccctcctaccta------ggacacgaaaattgaataaaaaggcaagttaa 334  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||      |||||| ||||||||||||||||| |||||||    
T  34017 aaggaatcctaagagttatttgcattttttctttgtaattcagcaagtgtccctcctatctatatataggacacaaaaattgaataaaaagg-aagttaa 33919  T
Q  335 tttttgttaaaaaa--gtgagtaattgctctttaggttctgcattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccata 432  Q
    ||||||||||||||  ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33918 tttttgttaaaaaaaagtgagtaattgctctttaggttctggattggacattgtattgatcatatcaagaatcctttcttgtggtgatcttcattccata 33819  T
Q  433 gacttatcattttctaggattagaaagtgtggcgtccctaaactctccatttcatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaacc 532  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33818 gacttatcattttctaggattagaaagtgtggcgtccctaaactcttcattccatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaacc 33719  T
Q  533 aaattctcattttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcc-tttggcacaccctttcattaacaata 620  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  33718 aaattctcattttcaactcaaatcattgtcaaaaataatcccaatgcataattttcgtttccttttggcacaccctttcattaacaata 33630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 34236 - 34166
Alignment:
Q  23 gagcatttaatctgaaggaggaaagaattcaagaattgaagaggaaagagacaagacttcaatgagacaat 93  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  34236 gagcatttaatctgaaggaggaaataatgcaagaattgaagaggaaagagacaagacttcaatgagacaat 34166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 141 - 622
Target Start/End: Original strand, 11475382 - 11475869
Alignment:
Q  141 agaccagccaccctcattcattgatttgtcttgtaaccatttcttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggctg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  11475382 agaccagccaccctcattcattgatttgtcttgtaaccatttcttgtattcatgttaatttacttcagctttaggaaataatgatagattaatttggctg 11475481  T
Q  241 aaggaatcttaagagttatttgcattttttctttgtaattcagcaagtgtccctcctacct------aggacacgaaaattgaataaaaaggcaagttaa 334  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||      |||||||||||||||||||||| | ||||||||    
T  11475482 aaggaatcctaagagttatttgcatattt-ctttgtaattcagcaagtgtccctcctacctttatataggacacgaaaattgaataaaa-gacaagttaa 11475579  T
Q  335 tttttgttaaaa-aagtgagtaattgctctttaggttctgcattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccatag 433  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11475580 tttttgttaaaaaaagtgagtaattgctctttaggttctggattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccatgg 11475679  T
Q  434 acttatcattttctaggattagaaagtgtggcgtccctaaactctccatttcatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaacca 533  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11475680 acttatcattttctaggattagaaagtgtggcgtctctaaactctccattccatttcttgtctgaaaccacaaatcagcctaaacaccaattcaaaacca 11475779  T
Q  534 aattctcattttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttc-ctttggcacaccctttcattaacaatatt 622  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  11475780 aattctcattttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttctttttggcacaccctttcattaacaatatt 11475869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 343 - 622
Target Start/End: Original strand, 34455684 - 34455966
Alignment:
Q  343 aaaaaagtgagtaattgctctttaggttctgcattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattcc-atagacttatca 441  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||    
T  34455684 aaaaaagtgagtaactgctctttaggttctggattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattcccacaaacttatca 34455783  T
Q  442 ttttctaggattagaaagtgtggcgtccctaaactctccatttcatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaaccaaattctca 541  Q
    ||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||     
T  34455784 ttttctacgattagaaagtgtggcgtccctaaaccctccattccatttcttgtttgaatccacaaatcagcctaaacacctattcaaatccaaattatcg 34455883  T
Q  542 ttttcaactcaaatcattgtc-aaaattaatcccaatacataattttcgt-ttcctttggcacaccctttcattaacaatatt 622  Q
    |||||||||||||  |||||| |||||||||||||||| ||||||||| | ||||||| ||||| | ||||||| ||||||||    
T  34455884 ttttcaactcaaacaattgtcaaaaattaatcccaatatataattttcatgttccttttgcacatcatttcattcacaatatt 34455966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 11475238 - 11475312
Alignment:
Q  19 taaagagcatttaatctgaaggaggaaagaattcaagaattgaagaggaaagagacaagacttcaatgagacaat 93  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  11475238 taaagagcatttaatctgaaggaggaaagaatgcaagaattgaagaggaaagggacaagacttcaatgagacaat 11475312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 407 - 471
Target Start/End: Complemental strand, 17266760 - 17266695
Alignment:
Q  407 tttcttgtggtgatcttcat-tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||   ||||||||||||||| ||||| |||||||||||||||||||||||    
T  17266760 tttcttgtggtgatcctcgcatccatagacttatcactttcttggattagaaagtgtggcgtccct 17266695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Original strand, 9167295 - 9167339
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  9167295 tccatagacttatcactttcttggattagaaagtgtggcgtccct 9167339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 15017684 - 15017640
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  15017684 tccatagacttatcactttcttggattagaaagtgtggcgtccct 15017640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 15019324 - 15019280
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  15019324 tccatagacttatcactttcttggattagaaagtgtggcgtccct 15019280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 39488191 - 39488147
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  39488191 tccatagacttatcactttcttggattagaaagtgtggcgtccct 39488147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 430 - 492
Target Start/End: Original strand, 34098832 - 34098893
Alignment:
Q  430 atagacttatcattttctaggattagaaagtgtggcgtccctaaactctccatttcatttctt 492  Q
    |||||||||||| ||| | |||||||||||||||||||||||   || |||||||||||||||    
T  34098832 atagacttatcactttattggattagaaagtgtggcgtccct-gtctatccatttcatttctt 34098893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 141 - 622
Target Start/End: Complemental strand, 18774641 - 18774152
Alignment:
Q  141 agaccagccaccctcattcattgatttgtcttgtaaccatttcttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggctg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18774641 agaccagccaccctcattcattgatttgtcttgtaaccatttcttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggctg 18774542  T
Q  241 aaggaatcttaagagttatttgcattttttctttgtaattcagcaagtgtccctcctaccta------ggacacgaaaattgaataaaaaggcaagttaa 334  Q
    |||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||      |||||||||||| |||||||| | ||||||||    
T  18774541 aaggaatcctaagagctatttgcattttt-ctttgtaattcagcaagtgtccctcctacctatatataggacacgaaaatggaataaaa-gacaagttaa 18774444  T
Q  335 tttttgttaaaaaa--gtgagtaattgctctttaggttctgcattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccata 432  Q
    ||||||||||||||  ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18774443 tttttgttaaaaaaaagtgagtaattgctctttaggttctggattggacctagtattgatcatatcaagaatcctttcttgtggtgatcttcattccata 18774344  T
Q  433 gacttatcattttctaggattagaaagtgtggcgtccctaaactctccatttcatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaacc 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18774343 gacttatcattttctaggattagaaagtgtggcgtccctaaactctccattccatttcttgtttgaaaccacagatcagcctaaacaccaattcaaaacc 18774244  T
Q  533 aaattctca-ttttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcct-ttggcacaccctttcattaacaatatt 622  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  18774243 aaattctcatttttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatt 18774152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 321 - 622
Target Start/End: Complemental strand, 16417708 - 16417404
Alignment:
Q  321 aaaaggcaagttaatttttgttaaaaaa--gtgagtaattgctctttaggttctgcattggaccttgtattgatcatatcaagaatcctttcttgtggtg 418  Q
    ||||| ||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16417708 aaaagacaagttaatttttgttaaaaaaaagtgagtaattgctctttaggttctggattggaccttgtattgatcatatcaagaatcctttcttgtggtg 16417609  T
Q  419 atcttcattccatagacttatcattttctaggattagaaagtgtggcgtccctaaactctccatttcatttcttgtttgaaaccacaaatcagcctaaac 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  16417608 atcttcattccatagacttatcattttctaggattagaaagtgtggcgtccctaaactctccattccatttcttgattgaaaccacaaatcagcctaaac 16417509  T
Q  519 accaattcaaaaccaaattctcattttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttc-ctttggcacaccctttcattaaca 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||    
T  16417508 accaattcaaaaccaaattctcattttcaactcaaatcattgtcaaaattaatctcaatacataattttcgtttctttttggcacaccctttcattaaca 16417409  T
Q  618 atatt 622  Q
    |||||    
T  16417408 atatt 16417404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 141 - 464
Target Start/End: Complemental strand, 17462704 - 17462373
Alignment:
Q  141 agaccagccaccctcattcattgatttgtcttgtaaccatttcttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggctg 240  Q
    ||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  17462704 agaccagacaccctaattcattgatttgtcttgaaaccatttcttgtattcatgttaatttacttcagccataggaaataacgatagattaatttggttg 17462605  T
Q  241 aaggaatcttaagagttatttgcatttttt-ctttgtaattcagcaagtgtccctcctacctag------gacacgaaaattgaataaaaaggcaagtta 333  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  17462604 aaggaatcttaagagttatttgcatttttttctttgtaattcaacaagtgtccctcctacctatatataagacacgaaaattgaataaaaaggcaagtta 17462505  T
Q  334 atttttgttaaaaaagtgagtaattgctctttaggttctgcattggaccttgtattgatcatatcaagaatcc-tttcttgtggtgatcttcattccata 432  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17462504 atttttgttaaaaaagtgagtaattgctctttaggttcttgattggaccttgtattgatcatatcaagaatccttttcttgtggtgatcttcattccata 17462405  T
Q  433 gacttatcattttctaggattagaaagtgtgg 464  Q
    ||||||| ||||||||||||||||||||||||    
T  17462404 gacttataattttctaggattagaaagtgtgg 17462373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 141 - 375
Target Start/End: Complemental strand, 17470611 - 17470371
Alignment:
Q  141 agaccagccaccctcattcattgatttgtcttgtaaccatttcttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggctg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17470611 agaccagccaccctcattcattgatttgtcttgtaaccatttcttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggctg 17470512  T
Q  241 aaggaatcttaagagttatttgcattttttctttgtaattcagcaagtgtccctcctacc------taggacacgaaaattgaataaaaaggcaagttaa 334  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||      |||||||| |||||||||||||||||||||||||    
T  17470511 aaggaatcttaagagttatttgcattttatatttgtaattcagcaagtgtccctcctacctatatataggacacaaaaattgaataaaaaggcaagttaa 17470412  T
Q  335 tttttgttaaaaaagtgagtaattgctctttaggttctgca 375  Q
    |||||||||||||||||||||||||||| |||||| |||||    
T  17470411 tttttgttaaaaaagtgagtaattgctccttaggtgctgca 17470371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 460 - 620
Target Start/End: Complemental strand, 17459868 - 17459707
Alignment:
Q  460 tgtggcgtccctaaactctccatttcatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaaccaaattctcattttcaactcaaatcatt 559  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17459868 tgtggcgtccctaaactctccattctatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaaccaaattctcattttcaactcaaatcatt 17459769  T
Q  560 gtcaaaattaatcccaatacataattttcgtttcc-tttggcacaccctttcattaacaata 620  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17459768 gtcaaaattaatcccaatacataattttcgtttccttttggcacaccctttcattaacaata 17459707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 17465249 - 17465175
Alignment:
Q  19 taaagagcatttaatctgaaggaggaaagaattcaagaattgaagaggaaagagacaagacttcaatgagacaat 93  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17465249 taaagagcttttaatctgaaggaggaaagaatgcaagaattgaagaggaaagagacaagacttcaatgagacaat 17465175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 18774785 - 18774711
Alignment:
Q  19 taaagagcatttaatctgaaggaggaaagaattcaagaattgaagaggaaagagacaagacttcaatgagacaat 93  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  18774785 taaagagcatttaatctgaaggaggaaagaatgcaagaattgaagaggaaagggacaagacttcaatgagacaat 18774711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 17462848 - 17462774
Alignment:
Q  19 taaagagcatttaatctgaaggaggaaagaattcaagaattgaagaggaaagagacaagacttcaatgagacaat 93  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  17462848 taaagagcatttaatctgaaggaggaaagaatgcaagaattgaagaggaaagagacaagacatcaataagacaat 17462774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 350 - 471
Target Start/End: Original strand, 18446160 - 18446280
Alignment:
Q  350 tgagtaattgctctttaggttctgcattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattcc-atagacttatcattttcta 448  Q
    |||| ||||||||||| ||||||| ||||||||   | ||||| |||||||||||| |||||||||||| || ||| ||| |||||||||||| |||||     
T  18446160 tgagcaattgctcttt-ggttctggattggaccaatt-ttgattatatcaagaatcttttcttgtggtggtcctcaatcccatagacttatcactttctt 18446257  T
Q  449 ggattagaaagtgtggcgtccct 471  Q
    |||||||||||||||||||||||    
T  18446258 ggattagaaagtgtggcgtccct 18446280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 17465105 - 17465064
Alignment:
Q  141 agaccagccaccctcattcattgatttgtcttgtaaccattt 182  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17465105 agaccagccaccctcattcattgatttgtcttgtaaccattt 17465064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Original strand, 20730984 - 20731028
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  20730984 tccatagacttatcactttcttggattagaaagtgtggcgtccct 20731028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 343 - 622
Target Start/End: Original strand, 288909 - 289189
Alignment:
Q  343 aaaaaagtgagtaattgctctttaggttctgcattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccatagacttatcat 442  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  288909 aaaaaagtgagtaattgctctttaggttctggattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccatagacttatcat 289008  T
Q  443 tttctaggattagaaagtgtggcgtccctaaactctccatttcatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaaccaaattctcat 542  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  289009 tttctaggattagaaagtgtggcgtccctaaactctccattccatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaaccaaattctcat 289108  T
Q  543 tttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttc-ctttggcacaccctttcattaacaatatt 622  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  289109 tttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttctttttggcacaccctttcattaacaatatt 289189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 327 - 622
Target Start/End: Complemental strand, 8913 - 8615
Alignment:
Q  327 caagttaatttttgttaaaaaa-gtgagtaattgctctttaggttctgcattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttca 425  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8913 caagttaatttttgttaaaaaaagtgagtaattgctctttaggttctggattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttca 8814  T
Q  426 ttccatagacttatcattttctaggattagaaagtgtggcgtccctaaactctccatttcatttcttgtttgaaaccacaaatcagcctaaacaccaatt 525  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  8813 ttccatagacttatcattttctaggattagaaagtgtggcgtccctaaactctccattccatttcttgtttgaaaccacatatcagcctaaacaccaatt 8714  T
Q  526 caaaaccaaattctca-ttttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcct-ttggcacaccctttcattaacaatatt 622  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  8713 caaaaccaaattctcatttttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatt 8615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 343 - 622
Target Start/End: Complemental strand, 21299526 - 21299244
Alignment:
Q  343 aaaaaagtgagtaattgctctttaggttctgcattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccatagacttatcat 442  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21299526 aaaaaagtgagtaattgctctttaggttctggattggacctagtattgatcatatcaagaatcctttcttgtggtgatcttcattccatagacttatcat 21299427  T
Q  443 tttctaggattagaaagtgtggcgtccctaaactctccatttcatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaaccaaattctca- 541  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  21299426 tttctaggattagaaagtgtggcgtccctaaactctccattccatttcttgtttgaaaccacagatcagcctaaacaccaattcaaaaccaaattctcat 21299327  T
Q  542 -ttttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcct-ttggcacaccctttcattaacaatatt 622  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  21299326 tttttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatt 21299244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 357 - 489
Target Start/End: Original strand, 12639454 - 12639586
Alignment:
Q  357 ttgctctttaggttctgcattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccatagacttatcattttctaggattaga 456  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12639454 ttgctctttaggttctggattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattctatagacttatcattttctaggattaga 12639553  T
Q  457 aagtgtggcgtccctaaactctccatttcattt 489  Q
    ||||||||||||||||||||||||||| |||||    
T  12639554 aagtgtggcgtccctaaactctccattccattt 12639586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 141 - 251
Target Start/End: Original strand, 12639329 - 12639439
Alignment:
Q  141 agaccagccaccctcattcattgatttgtcttgtaaccatttcttgtattcatgttaatttacttcagccataggaaataatgatagattaatttggctg 240  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12639329 agaccagccaccctcattcattgatttgtcttgtaactatttcttgtatttatgttaatttacttcagccataggaaataatgatagattaatttggctg 12639428  T
Q  241 aaggaatctta 251  Q
    ||| |||||||    
T  12639429 aagaaatctta 12639439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 506 - 603
Target Start/End: Original strand, 9344211 - 9344308
Alignment:
Q  506 aatcagcctaaacaccaattcaaaaccaaattctcattttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcctttggcaca 603  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||||    
T  9344211 aatcagccaaaacaccaattcaaaaccaaattctcgttttcaactcaaatcatcgtcaaaatcaatcctaatacataattttcgtttcttttggcaca 9344308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 12639185 - 12639259
Alignment:
Q  19 taaagagcatttaatctgaaggaggaaagaattcaagaattgaagaggaaagagacaagacttcaatgagacaat 93  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  12639185 taaagagcatttaatctgaaggaggaaataatgcaagaattgaagaggaaagagacaagacttcaatgagacaat 12639259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 9344042 - 9344112
Alignment:
Q  19 taaagagcatttaatctgaaggaggaaagaattcaagaattgaagaggaaagagacaagacttcaatgaga 89  Q
    |||||||||||||||||||||||||||||||| |||||| |||| || ||| |||||||||||||||||||    
T  9344042 taaagagcatttaatctgaaggaggaaagaatgcaagaactgaaaagaaaacagacaagacttcaatgaga 9344112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 427 - 492
Target Start/End: Complemental strand, 30518326 - 30518262
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccctaaactctccatttcatttctt 492  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||   || |||||||||||||||    
T  30518326 tccatagacttatcactttcttggattagaaagtgtggcgtccct-gtctatccatttcatttctt 30518262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Original strand, 18553447 - 18553491
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  18553447 tccatagacttatcactttcttggattagaaagtgtggcgtccct 18553491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Original strand, 18781863 - 18781907
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  18781863 tccatagacttatcactttcttggattagaaagtgtggcgtccct 18781907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 20417594 - 20417550
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  20417594 tccatagacttatcactttcttggattagaaagtgtggcgtccct 20417550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 20419680 - 20419636
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  20419680 tccatagacttatcactttcttggattagaaagtgtggcgtccct 20419636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 20414947 - 20414903
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||    
T  20414947 tccatagacttatcactttcttagattagaaagtgtggcgtccct 20414903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 228; Significance: 1e-125; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 355 - 622
Target Start/End: Original strand, 44794703 - 44794973
Alignment:
Q  355 aattgctctttaggttctgcattggaccttgtattgatcatatcaagaatcctttcttgtggtgatcttcattccatagacttatcattttctaggatta 454  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44794703 aattgctctttaggttctggattggacctagtattgatcatatcaagaatcctttcttgtggtgatcttcattccatagacttatcattttctaggatta 44794802  T
Q  455 gaaagtgtggcgtccctaaactctccatttcatttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaaccaaattctca--ttttcaactca 552  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||  |||||||||||    
T  44794803 gaaagtgtggcgtccctaaactctccattccatttcttgtttgaaaccatagatcagcctaaacaccaattcaaaaccaaattctcattttttcaactca 44794902  T
Q  553 aatcattgtcaaaattaatcccaatacataattttcgtttcct-ttggcacaccctttcattaacaatatt 622  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  44794903 aatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatt 44794973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 488 - 622
Target Start/End: Complemental strand, 21465252 - 21465117
Alignment:
Q  488 ttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaaccaaattctcattttcaactcaaatcattgtcaaaattaatcccaatacataatttt 587  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21465252 ttcttgtttgaaaccacaaatcagcctaaacaccaattcaaaatcaaattctcattttcaactcaaatcattgtcaaaattaatcccaatacataatttt 21465153  T
Q  588 cgtttc-ctttggcacaccctttcattaacaatatt 622  Q
    ||||||  ||||||||||||||||||||||||||||    
T  21465152 cgtttctttttggcacaccctttcattaacaatatt 21465117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 512 - 622
Target Start/End: Complemental strand, 44794716 - 44794602
Alignment:
Q  512 cctaaacaccaattcaaaaccaaattctcatttt---caactcaaatcattgtcaaaattaatcccaatacataattttcgtttcct-ttggcacaccct 607  Q
    |||||| | |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  44794716 cctaaagagcaattcaaaaccaaattctcatttttttcaactcaaatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccct 44794617  T
Q  608 ttcattaacaatatt 622  Q
    |||||||||||||||    
T  44794616 ttcattaacaatatt 44794602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 6050264 - 6050220
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  6050264 tccatagacttatcactttcttggattagaaagtgtggcgtccct 6050220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Original strand, 15409909 - 15409953
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  15409909 tccatagacttatcactttcttggattagaaagtgtggcgtccct 15409953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 457 - 622
Target Start/End: Original strand, 127083 - 127253
Alignment:
Q  457 aagtgtggcgtccctaaactctccatttcatttcttgtttgaaaccacaaatcagcctaaacaccaattc--aaaaccaaattctca-ttttcaact-ca 552  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||| ||||||||| ||    
T  127083 aagtgtggcgtccctaaactctccattccatttcttgtttgaaaccacagatcagcctaaacaccaattcaaaaaaccaaattctcatttttcaactcca 127182  T
Q  553 aatcattgtcaaaattaatcccaatacataattttcgtttcct-ttggcacaccctttcattaacaatatt 622  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  127183 aatcattgtcaaaattaatcccaatacataattttcgtttcttgttggcacaccctttcattaacaatatt 127253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 427 - 472
Target Start/End: Original strand, 54881 - 54926
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtcccta 472  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  54881 tccatagacttatcactttcttggattagaaagtgtggcgtcccta 54926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 914 - 870
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  914 tccatagacttatcactttcttggattagaaagtgtggcgtccct 870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Original strand, 6725 - 6769
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  6725 tccatagacttatcactttcttggattagaaagtgtggcgtccct 6769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 22656 - 22612
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  22656 tccatagacttatcactttcttggattagaaagtgtggcgtccct 22612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Original strand, 33327 - 33371
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  33327 tccatagacttatcaatttcttggattagaaagtgtggcgtccct 33371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Original strand, 136867 - 136911
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  136867 tccatagacttatcactttcttggattagaaagtgtggcgtccct 136911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 25802 - 25758
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    |||||| |||||||| ||||| |||||||||||||||||||||||    
T  25802 tccatatacttatcactttcttggattagaaagtgtggcgtccct 25758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 4635 - 4591
Alignment:
Q  427 tccatagacttatcattttctaggattagaaagtgtggcgtccct 471  Q
    ||||||||||||||| ||||| ||||||||||||||||| |||||    
T  4635 tccatagacttatcactttcttggattagaaagtgtggcatccct 4591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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