View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10785_low_3 (Length: 399)
Name: NF10785_low_3
Description: NF10785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10785_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 53636085 - 53636174
Alignment:
| Q |
18 |
atgaatgctctatttttatgttgactaagaaggagtatgacatatactaatactactattgaagttacatgaattctaattactgtactc |
107 |
Q |
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| T |
53636085 |
atgaatgctctatttttatgttgactaagaaggagcatgacatatactaatactactattgaagttacatgaattctaattactgtactc |
53636174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 53636375 - 53636433
Alignment:
| Q |
297 |
atgtgacactgagattagtatataaagcgtcacatcatagtataaggtccgtttatgta |
355 |
Q |
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| T |
53636375 |
atgtgacactgagattagtatataaagcgtcacatcatagtataaggtccgtttatgta |
53636433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 53636222 - 53636266
Alignment:
| Q |
156 |
tggttaatacaggtgaaggtatatctttcaactctcttgcaagcc |
200 |
Q |
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| T |
53636222 |
tggttaatacaggtgaaggtatatctttcaactctcttgcaagcc |
53636266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 48335497 - 48335440
Alignment:
| Q |
297 |
atgtgacactgagattagtatataaagcgtcacatcatagtataaggtccgtttatgta |
355 |
Q |
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| T |
48335497 |
atgtgacactgaaattagta-ataaagcgtcacatcatagtataaggcccatttatgta |
48335440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 48335626 - 48335569
Alignment:
| Q |
297 |
atgtgacactgagattagtatataaagcgtcacatcatagtataaggtccgtttatgta |
355 |
Q |
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| T |
48335626 |
atgtgacactgaaattagta-ataaagcgtcacatcatagtataaggcccatttatgta |
48335569 |
T |
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