View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10785_low_4 (Length: 380)
Name: NF10785_low_4
Description: NF10785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10785_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 38 - 338
Target Start/End: Complemental strand, 33415888 - 33415592
Alignment:
| Q |
38 |
ttttaagaaaatgtggtttgcttacaacagcaaaactcaaatacacaaataccattatattattgtgtttatgtatcataa-gtcacaaatttcacttac |
136 |
Q |
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| T |
33415888 |
ttttaagaaaatgtggctttcttacaacagcaaaactcaaatacacaaataccattatattattgtgtttatctatcataaagtcacaaatttcacttac |
33415789 |
T |
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| Q |
137 |
aacagagaataaagaaaaacctcaatatgtctcaaattcgtgtatttgatacaaatacttcattttttcaagtactcatgcttagtaggtgactataatt |
236 |
Q |
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| T |
33415788 |
aacagagaataaagaaaaacctcaatatgtctcaaattcgt--atttgatacaaatacttcattttttcaagtactcatgcttagtaggtgactataatt |
33415691 |
T |
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| Q |
237 |
atctaaaaaccacaatatgggaatcatcccataaatgattataattttttcattgaaaaccacaaatgattgatgattattcaagaaagcaaaacatgca |
336 |
Q |
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| T |
33415690 |
atctaaaaaccacaatatgggaatcatcccataaatgattataattttttcattgaaaaccacaaatgat---tgattattcaagaaagcaaaacatgca |
33415594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 121 - 234
Target Start/End: Complemental strand, 33410386 - 33410270
Alignment:
| Q |
121 |
cacaaatttcacttacaacagagaataaagaaaaacctcaatatgtctcaaattcgtgtatttgatacaaatacttcatttttt-----caagtactcat |
215 |
Q |
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|||| ||||||||||||| || ||| |||||||||||||||||||||||||||| ||||||||||||||| |||| |||||| ||||||||||| |
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| T |
33410386 |
cacacatttcacttacaatggataatgaagaaaaacctcaatatgtctcaaattc--gtatttgatacaaatgcttcgttttttttttccaagtactcat |
33410289 |
T |
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| Q |
216 |
gcttagtaggtgactataa |
234 |
Q |
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| T |
33410288 |
gcttagtaggtgactataa |
33410270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 33400061 - 33400006
Alignment:
| Q |
199 |
ttttttcaagtactcatgcttagtaggtgactataattatctaaaaaccacaatat |
254 |
Q |
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| T |
33400061 |
tttttccaagtactcatgcttagtaggtcactgtaattatttaaaaaccataatat |
33400006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 33397901 - 33397852
Alignment:
| Q |
237 |
atctaaaaaccacaatatgggaatcatcccataaatgattataatttttt |
286 |
Q |
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| T |
33397901 |
atctaaaaaccacaatatgcaaatcaccccataaattattatactttttt |
33397852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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